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The map label for this gene is kduI2 [H]

Identifier: 29349514

GI number: 29349514

Start: 5369061

End: 5369981

Strand: Reverse

Name: kduI2 [H]

Synonym: BT_4106

Alternate gene names: 29349514

Gene position: 5369981-5369061 (Counterclockwise)

Preceding gene: 29349515

Following gene: 29349513

Centisome position: 85.78

GC content: 45.93

Gene sequence:

>921_bases
ATGAAAAAATTAGCAATTGCAATGATGATGGGTATCGCAGCTATGTCTGCTTCTGCCCAGGTAAATTACAAGATGCAGGT
GGCTTGCAATCCGCAAGACGTGAAAACGTATAATACAAACCGCCTGCGTAGTAGCTTCCTGATGGAAAAAGTAATGGTTC
CTGATCAAATCAACGTGACTTATTCCATGTACGACCGCCTCATCTTCGGTGGTGCCGTACCTGCAACAAAAGAGCTGGTA
CTTGAAACTATCGATCCGTTGAAAGCTAAGTATTTCCTCGAACGTCGCGAACTGGGTGTTATCAACATTGGCGGCGAAGG
TATCGTAACTGTTGACGGCAAGGAATATACGCTGAACTTCAAAGATGCATTGTATGTAGGCAGAGGCAAGCAGAAAGTTA
CTTTCAAGAGCAAAGATGCCAGCAAACCTGCAAAATTCTATATCAACTCCGCTACTGCCCACAAGGAGTACAAAACTCAG
TTGATCACCATCGACGGACGCAAAGGTTCTCTGAAAGCAAATTCTTTCGCGGCAGGAAAGATGGAAGAAAGCAACGACCG
CGTTATCAACCAGCTGATTGTTAACAACGTACTTGAAGAAGGTCCTTGCCAACTGCAAATGGGATTGACAGAACTGAAAC
CGGGTAGTGTATGGAACACCATGCCGGCACATACTCACAGTCGCCGTGTGGAAGCATATTTCTACTTCAACGTGCCGGAA
GGCAACTCCATCTGCCACTTCATGGGCGAACCTCAGGAAGAACGCATCGTATGGATGCAGAACGAACAAGCTATCATGTC
ACCGGAATGGTCTATCCACGCAGCTGCCGGAACCAGCAACTATATGTTCATCTGGGGTATGGCTGGTGAAAATCTTGACT
ATGGCGACATGGATAAGATTAAATATACAGAAATGCGCTAA

Upstream 100 bases:

>100_bases
TGGGAATGGCAGTCTACAACCGTATCCGCATGAAAAGAAATGATGCGAAAAACGCAGCTAACGATTAAATATAAGTATAA
TCCAAATAAAGATTCGAAAG

Downstream 100 bases:

>100_bases
TCTTTGCGCAGCTCTTTAGCACATATCAAGTGATCCGAAAAACTTCATTCTTTCCTCGAAACGGGGAGAGAATGAAGTTT
TCCGGATTTGTCATATTCTT

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase 2; DKI isomerase 2 [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKKLAIAMMMGIAAMSASAQVNYKMQVACNPQDVKTYNTNRLRSSFLMEKVMVPDQINVTYSMYDRLIFGGAVPATKELV
LETIDPLKAKYFLERRELGVINIGGEGIVTVDGKEYTLNFKDALYVGRGKQKVTFKSKDASKPAKFYINSATAHKEYKTQ
LITIDGRKGSLKANSFAAGKMEESNDRVINQLIVNNVLEEGPCQLQMGLTELKPGSVWNTMPAHTHSRRVEAYFYFNVPE
GNSICHFMGEPQEERIVWMQNEQAIMSPEWSIHAAAGTSNYMFIWGMAGENLDYGDMDKIKYTEMR

Sequences:

>Translated_306_residues
MKKLAIAMMMGIAAMSASAQVNYKMQVACNPQDVKTYNTNRLRSSFLMEKVMVPDQINVTYSMYDRLIFGGAVPATKELV
LETIDPLKAKYFLERRELGVINIGGEGIVTVDGKEYTLNFKDALYVGRGKQKVTFKSKDASKPAKFYINSATAHKEYKTQ
LITIDGRKGSLKANSFAAGKMEESNDRVINQLIVNNVLEEGPCQLQMGLTELKPGSVWNTMPAHTHSRRVEAYFYFNVPE
GNSICHFMGEPQEERIVWMQNEQAIMSPEWSIHAAAGTSNYMFIWGMAGENLDYGDMDKIKYTEMR
>Mature_306_residues
MKKLAIAMMMGIAAMSASAQVNYKMQVACNPQDVKTYNTNRLRSSFLMEKVMVPDQINVTYSMYDRLIFGGAVPATKELV
LETIDPLKAKYFLERRELGVINIGGEGIVTVDGKEYTLNFKDALYVGRGKQKVTFKSKDASKPAKFYINSATAHKEYKTQ
LITIDGRKGSLKANSFAAGKMEESNDRVINQLIVNNVLEEGPCQLQMGLTELKPGSVWNTMPAHTHSRRVEAYFYFNVPE
GNSICHFMGEPQEERIVWMQNEQAIMSPEWSIHAAAGTSNYMFIWGMAGENLDYGDMDKIKYTEMR

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family [H]

Homologues:

Organism=Escherichia coli, GI1789209, Length=274, Percent_Identity=50.7299270072993, Blast_Score=283, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120 [H]

Pfam domain/function: PF04962 KduI [H]

EC number: =5.3.1.17 [H]

Molecular weight: Translated: 34513; Mature: 34513

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLAIAMMMGIAAMSASAQVNYKMQVACNPQDVKTYNTNRLRSSFLMEKVMVPDQINVT
CCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEECCHHHHHHHHHHHHHCCCCCCEEE
YSMYDRLIFGGAVPATKELVLETIDPLKAKYFLERRELGVINIGGEGIVTVDGKEYTLNF
HHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCEEEECCCEEEEECCCEEEEEE
KDALYVGRGKQKVTFKSKDASKPAKFYINSATAHKEYKTQLITIDGRKGSLKANSFAAGK
CCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCEECCC
MEESNDRVINQLIVNNVLEEGPCQLQMGLTELKPGSVWNTMPAHTHSRRVEAYFYFNVPE
CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
GNSICHFMGEPQEERIVWMQNEQAIMSPEWSIHAAAGTSNYMFIWGMAGENLDYGDMDKI
CCCEEEECCCCCCCEEEEEECCCEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCE
KYTEMR
EEECCC
>Mature Secondary Structure
MKKLAIAMMMGIAAMSASAQVNYKMQVACNPQDVKTYNTNRLRSSFLMEKVMVPDQINVT
CCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEECCHHHHHHHHHHHHHCCCCCCEEE
YSMYDRLIFGGAVPATKELVLETIDPLKAKYFLERRELGVINIGGEGIVTVDGKEYTLNF
HHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCEEEECCCEEEEECCCEEEEEE
KDALYVGRGKQKVTFKSKDASKPAKFYINSATAHKEYKTQLITIDGRKGSLKANSFAAGK
CCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCEECCC
MEESNDRVINQLIVNNVLEEGPCQLQMGLTELKPGSVWNTMPAHTHSRRVEAYFYFNVPE
CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
GNSICHFMGEPQEERIVWMQNEQAIMSPEWSIHAAAGTSNYMFIWGMAGENLDYGDMDKI
CCCEEEECCCCCCCEEEEEECCCEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCE
KYTEMR
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663928 [H]