Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
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Accession | NC_004663 |
Length | 6,260,361 |
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The map label for this gene is 29346710
Identifier: 29346710
GI number: 29346710
Start: 1621178
End: 1622020
Strand: Reverse
Name: 29346710
Synonym: BT_1300
Alternate gene names: NA
Gene position: 1622020-1621178 (Counterclockwise)
Preceding gene: 29346711
Following gene: 29346709
Centisome position: 25.91
GC content: 41.04
Gene sequence:
>843_bases ATGAGTAGTAAATACTATTACTTGGTAGCCGGTTTGCCGGAACTCACTCTGGAGGACAGTAAACTGAGCTATACAGTAGC CGATTTTAAAACCGAAATCTACAGTGGATTGTCTGCTTCAGACCAGAAGTTGATTGACCTGTTCTATCTGAAGTTTGATA ATGCCAACGTGTTGAAACTCCTCAAAGACAAAGAGGCGGAAATAGACAGACGGGGAAACTATTCTGCTGCGGAACTCACC GAGTATATTTCTATTCTGAAAGAAGGCGGTGAGATCAGTCCTAAAGAATTCCCTTCCTATTTATCTACTTTTATTTCCGA CTATCTGAATACTCCGGCTGAAAGCATAGTGTTGCAGGAAGACCATCTGGCTGCTCTGTATTATGAACATGCTATGAAAT GCGGAAATAAGTTCGTCTCTTCCTGGTTTGAATTCAATCTGAACATTAATAATATTCTTGTTGCATTTACAGCCCGTAAA TTCAAATGGGATATTGCTTCCCATATTGTAGGAAATACGGAAGTGTGCGAAGCTTTGCGTACATCCAGTGCCCGCGATTT TGGTTTGTCCGGTGAAGTGGATGTTTTTGAATCGTTGGTGAAGACCAGTGAGATTACGGAACTGGTGGAACGTGAAAAGA AATTGGATGCTCTGCGGTGGAACTGGATGGAAGATGCTATCTTCTTCGATTATTTCACTGTAGAACGTATTTTCGCTTTC TTACTGAAGCTGGAAATGATTGAGCGTTGGATTTCATTGGATAAGGAAAGAGGAAATCAATTGTTCCGAAGCATTATTGA ATCGCTGAAGAATGAGGTACAGATTCCCGCAGAATTCAGATAA
Upstream 100 bases:
>100_bases GTTCATATAAGGTGAACTTCGGAGAAGAAGAATTCATGAATTACTTCAAAGCGTTCTTGCGTCCTCAATTGGTAGAAATG CTATTTTAAAAGAAGCGACT
Downstream 100 bases:
>100_bases TAAATTAAAAAAAATATATGGCAACAAAAGGAACTGTTAGTGGCGTTATTGCCAACATGGTGACCCTCGTCGTTGACGGC CCGGTAGCTCAGAATGAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MSSKYYYLVAGLPELTLEDSKLSYTVADFKTEIYSGLSASDQKLIDLFYLKFDNANVLKLLKDKEAEIDRRGNYSAAELT EYISILKEGGEISPKEFPSYLSTFISDYLNTPAESIVLQEDHLAALYYEHAMKCGNKFVSSWFEFNLNINNILVAFTARK FKWDIASHIVGNTEVCEALRTSSARDFGLSGEVDVFESLVKTSEITELVEREKKLDALRWNWMEDAIFFDYFTVERIFAF LLKLEMIERWISLDKERGNQLFRSIIESLKNEVQIPAEFR
Sequences:
>Translated_280_residues MSSKYYYLVAGLPELTLEDSKLSYTVADFKTEIYSGLSASDQKLIDLFYLKFDNANVLKLLKDKEAEIDRRGNYSAAELT EYISILKEGGEISPKEFPSYLSTFISDYLNTPAESIVLQEDHLAALYYEHAMKCGNKFVSSWFEFNLNINNILVAFTARK FKWDIASHIVGNTEVCEALRTSSARDFGLSGEVDVFESLVKTSEITELVEREKKLDALRWNWMEDAIFFDYFTVERIFAF LLKLEMIERWISLDKERGNQLFRSIIESLKNEVQIPAEFR >Mature_279_residues SSKYYYLVAGLPELTLEDSKLSYTVADFKTEIYSGLSASDQKLIDLFYLKFDNANVLKLLKDKEAEIDRRGNYSAAELTE YISILKEGGEISPKEFPSYLSTFISDYLNTPAESIVLQEDHLAALYYEHAMKCGNKFVSSWFEFNLNINNILVAFTARKF KWDIASHIVGNTEVCEALRTSSARDFGLSGEVDVFESLVKTSEITELVEREKKLDALRWNWMEDAIFFDYFTVERIFAFL LKLEMIERWISLDKERGNQLFRSIIESLKNEVQIPAEFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32411; Mature: 32280
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSKYYYLVAGLPELTLEDSKLSYTVADFKTEIYSGLSASDQKLIDLFYLKFDNANVLKL CCCCEEEEEECCCCCEECCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHEEEECCCHHHHH LKDKEAEIDRRGNYSAAELTEYISILKEGGEISPKEFPSYLSTFISDYLNTPAESIVLQE HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEECC DHLAALYYEHAMKCGNKFVSSWFEFNLNINNILVAFTARKFKWDIASHIVGNTEVCEALR CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHCCCHHHHHHHH TSSARDFGLSGEVDVFESLVKTSEITELVEREKKLDALRWNWMEDAIFFDYFTVERIFAF HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH LLKLEMIERWISLDKERGNQLFRSIIESLKNEVQIPAEFR HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SSKYYYLVAGLPELTLEDSKLSYTVADFKTEIYSGLSASDQKLIDLFYLKFDNANVLKL CCCEEEEEECCCCCEECCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHEEEECCCHHHHH LKDKEAEIDRRGNYSAAELTEYISILKEGGEISPKEFPSYLSTFISDYLNTPAESIVLQE HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEECC DHLAALYYEHAMKCGNKFVSSWFEFNLNINNILVAFTARKFKWDIASHIVGNTEVCEALR CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHCCCHHHHHHHH TSSARDFGLSGEVDVFESLVKTSEITELVEREKKLDALRWNWMEDAIFFDYFTVERIFAF HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH LLKLEMIERWISLDKERGNQLFRSIIESLKNEVQIPAEFR HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA