| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29346438
Identifier: 29346438
GI number: 29346438
Start: 1291332
End: 1293506
Strand: Reverse
Name: 29346438
Synonym: BT_1028
Alternate gene names: NA
Gene position: 1293506-1291332 (Counterclockwise)
Preceding gene: 29346439
Following gene: 29346437
Centisome position: 20.66
GC content: 43.82
Gene sequence:
>2175_bases ATGGTGACAGGACTAATCTGTTTTACTGGATGCAGCGATGATTTTCTGAAAGACAAGAAAGTATATGGAAGCTATGACGC TTCGGTTGTGTACGAAAATTATGAAACAGCCAAAAGTCGTGTGGACTTTTTATATCAGTCTTTATTGCCTAGTTCTACCG GAGGTTCCAATGCTTTGACCGATATAACCAGTGCGGGTATTGATGACGATTTTTCCAAATGTACGGAGGAATATGGAGAC TACTCTATTTTCAATGATCCTACGGCATCTCTTACTATTCAGACTGTTCCCGATTATTTTTATGTAATCAACAGTGAAAG AAGTCCTTGGGGACGTATCCGCGAATGTAATAATGTGATTGAAGGTGTGACGGGAAGTGCGACTCTTTCGCAGACAGAGA AAGAACAATTACTCGGACAAGCTTACTTTTTTCGTGCATGGCGTTATTATCTGTTGGTGAAAATGTATGGTGGTGTTCCC ATTGTAGACCACGTCCAGAATCCGGTGATAGGTGATGGTAATGGTGAGAATCTGGTCATTCCTCGTTCCTCGACTAAGGC TTGTATAGACTTTATATGCGATGACTTGGAACTGGCAGCCAGCTATCTTCCTGCACGTTGGCAGAATGAAGGGCAGGATT ACGGACGCATAACCGCCGGTGCAGCACTTGCTCTAAAAGGTCGTACATTGTTGCTTTATGCTAGTCCACTTTTTAACCGT GCCGATGACGCATCTCGTTGGAAAGATGCTTACGACGCCAATTTTGCTGCCATCACTAAACTGAATGAAGGTAACTTCGG ACTTGCTTATGAAGGCAATGGCGGAGAAGACAATGCCAAGAATTGGGCCAGAATGTTCGCCACTTATACAGGTGGAAGCG AAGCCGTATTTGTTACTTTATATAATAATGTGTCTCCTATTGCTTCACAAAACATCAACCGATACAACTTGTGGGAGCAG GGAATCCGACCAGGAAATATAAACGGAGGCGGAGGAAAGACTCCTACAGCGGAAATAATAGACATCTTCCCGATGATTGA CGGTAAGAAACCGATGGAATCAGGAGTTCATTATGACCCTAAAAAGTTCTTTCTAAATCGTGACCCGCGTTTCTACCGTA CATTTGCATTTCCGGGGGTAGAGTGGAAATTCAACAGTGGCAATGTCGATTTTTCAGGAGCAACGATGTCTGGTTTATGC CCAACCCGTTATACCAGTGGTGCGAACTATGAACTTTGGAATTATTGTTGGTATACTACGGCTGATGAGCGTAATAATCC GAGTAGAAGCGGTTTTGCAGCCGATATGCTGGGCACTAAGAATAGAGGAGTCTATGTTCGTAAACGTTCGGATGATTTTG ATTTGGGCACTAGTCTTTATGTGTTTACTGATAACAGCAGTGGTGATCAGCAGGGATTCAGACGATCGGCAGCTCCTTAC ATGGAGATACGGTATGCGGAAGTATTGCTGAATCTGGCAGAATCAGCTTGTGGTGCGGGCGGCACTTATCATGCGGAAGG GGTCAAGGCGCTGAAAGCCGTACGTGGCAGAGTAGGCTATACGAGTGCAAATAATTATGGCCTGGATGCGGCGATTGAAA CTGACCGTGCTAAATTGTTTGAAGCTATATTGTATGAACGTCAGGTAGAGTTGGCTTTTGAAGGTAAACGTGCGTATGAT ATGCGTCGTTGGATGCTATTTGACGGAGGTGTAGGACAAGGTGCTTTGAATGCAAGTTGGGCATTGAGTGGCTTTGGAGG TAATACTTGTACTTATTTGGGTGTGACTCCGATGAATGAACGTGGTAAGAGATATCGCATAGAAATCAATGTTGAAGGTA CCGGGTCTGCAAATAATGACAGTGATCCGATTAAAAACGTAGAGCGACCAGCAGCACTGACATTGAATGAGAAGATTGCT ACGGAAGCAGACGGAGAAACGATTCTTGATCCGGCTGTGTCAAGTATATGTACATTCTATGATACCTATTTCTCACGTAA AGATATCAGTCTTGATGGTAATGTGCTGGACATTAATCCTTATTTCCAACCCAGATATTATTTCTTTGGATTGCGTCAAA GTGCACAGCAAACTAATGCGACATTGTATCAGACCATTGGTTGGGAAGATTATGCTCACGGTGGTATGGGTACTTTCGAC CCATTGGCAGAATAA
Upstream 100 bases:
>100_bases ATCCTAATTTGCGTAAAGTAACTTTAGGTGTTAATGTCTCATTCTAATATCAAAGAAGATTATGAAAGAAAAGATAAATA AAATATGTTTGACAGCATCG
Downstream 100 bases:
>100_bases AAGATTTTTCTGATTCCCGGAAAAAAGTAATTTAATATAAAAAGGTGGCCTCAAGGCACTTTCCTTTTAATAGGAAAAGT GTCTTGAGGCCTTTTTTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 724; Mature: 724
Protein sequence:
>724_residues MVTGLICFTGCSDDFLKDKKVYGSYDASVVYENYETAKSRVDFLYQSLLPSSTGGSNALTDITSAGIDDDFSKCTEEYGD YSIFNDPTASLTIQTVPDYFYVINSERSPWGRIRECNNVIEGVTGSATLSQTEKEQLLGQAYFFRAWRYYLLVKMYGGVP IVDHVQNPVIGDGNGENLVIPRSSTKACIDFICDDLELAASYLPARWQNEGQDYGRITAGAALALKGRTLLLYASPLFNR ADDASRWKDAYDANFAAITKLNEGNFGLAYEGNGGEDNAKNWARMFATYTGGSEAVFVTLYNNVSPIASQNINRYNLWEQ GIRPGNINGGGGKTPTAEIIDIFPMIDGKKPMESGVHYDPKKFFLNRDPRFYRTFAFPGVEWKFNSGNVDFSGATMSGLC PTRYTSGANYELWNYCWYTTADERNNPSRSGFAADMLGTKNRGVYVRKRSDDFDLGTSLYVFTDNSSGDQQGFRRSAAPY MEIRYAEVLLNLAESACGAGGTYHAEGVKALKAVRGRVGYTSANNYGLDAAIETDRAKLFEAILYERQVELAFEGKRAYD MRRWMLFDGGVGQGALNASWALSGFGGNTCTYLGVTPMNERGKRYRIEINVEGTGSANNDSDPIKNVERPAALTLNEKIA TEADGETILDPAVSSICTFYDTYFSRKDISLDGNVLDINPYFQPRYYFFGLRQSAQQTNATLYQTIGWEDYAHGGMGTFD PLAE
Sequences:
>Translated_724_residues MVTGLICFTGCSDDFLKDKKVYGSYDASVVYENYETAKSRVDFLYQSLLPSSTGGSNALTDITSAGIDDDFSKCTEEYGD YSIFNDPTASLTIQTVPDYFYVINSERSPWGRIRECNNVIEGVTGSATLSQTEKEQLLGQAYFFRAWRYYLLVKMYGGVP IVDHVQNPVIGDGNGENLVIPRSSTKACIDFICDDLELAASYLPARWQNEGQDYGRITAGAALALKGRTLLLYASPLFNR ADDASRWKDAYDANFAAITKLNEGNFGLAYEGNGGEDNAKNWARMFATYTGGSEAVFVTLYNNVSPIASQNINRYNLWEQ GIRPGNINGGGGKTPTAEIIDIFPMIDGKKPMESGVHYDPKKFFLNRDPRFYRTFAFPGVEWKFNSGNVDFSGATMSGLC PTRYTSGANYELWNYCWYTTADERNNPSRSGFAADMLGTKNRGVYVRKRSDDFDLGTSLYVFTDNSSGDQQGFRRSAAPY MEIRYAEVLLNLAESACGAGGTYHAEGVKALKAVRGRVGYTSANNYGLDAAIETDRAKLFEAILYERQVELAFEGKRAYD MRRWMLFDGGVGQGALNASWALSGFGGNTCTYLGVTPMNERGKRYRIEINVEGTGSANNDSDPIKNVERPAALTLNEKIA TEADGETILDPAVSSICTFYDTYFSRKDISLDGNVLDINPYFQPRYYFFGLRQSAQQTNATLYQTIGWEDYAHGGMGTFD PLAE >Mature_724_residues MVTGLICFTGCSDDFLKDKKVYGSYDASVVYENYETAKSRVDFLYQSLLPSSTGGSNALTDITSAGIDDDFSKCTEEYGD YSIFNDPTASLTIQTVPDYFYVINSERSPWGRIRECNNVIEGVTGSATLSQTEKEQLLGQAYFFRAWRYYLLVKMYGGVP IVDHVQNPVIGDGNGENLVIPRSSTKACIDFICDDLELAASYLPARWQNEGQDYGRITAGAALALKGRTLLLYASPLFNR ADDASRWKDAYDANFAAITKLNEGNFGLAYEGNGGEDNAKNWARMFATYTGGSEAVFVTLYNNVSPIASQNINRYNLWEQ GIRPGNINGGGGKTPTAEIIDIFPMIDGKKPMESGVHYDPKKFFLNRDPRFYRTFAFPGVEWKFNSGNVDFSGATMSGLC PTRYTSGANYELWNYCWYTTADERNNPSRSGFAADMLGTKNRGVYVRKRSDDFDLGTSLYVFTDNSSGDQQGFRRSAAPY MEIRYAEVLLNLAESACGAGGTYHAEGVKALKAVRGRVGYTSANNYGLDAAIETDRAKLFEAILYERQVELAFEGKRAYD MRRWMLFDGGVGQGALNASWALSGFGGNTCTYLGVTPMNERGKRYRIEINVEGTGSANNDSDPIKNVERPAALTLNEKIA TEADGETILDPAVSSICTFYDTYFSRKDISLDGNVLDINPYFQPRYYFFGLRQSAQQTNATLYQTIGWEDYAHGGMGTFD PLAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80255; Mature: 80255
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTGLICFTGCSDDFLKDKKVYGSYDASVVYENYETAKSRVDFLYQSLLPSSTGGSNALT CCEEEEEEECCCHHHHCCCHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHH DITSAGIDDDFSKCTEEYGDYSIFNDPTASLTIQTVPDYFYVINSERSPWGRIRECNNVI HHHHCCCCHHHHHHHHHHCCEEEECCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHH EGVTGSATLSQTEKEQLLGQAYFFRAWRYYLLVKMYGGVPIVDHVQNPVIGDGNGENLVI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEECCCCCEEEE PRSSTKACIDFICDDLELAASYLPARWQNEGQDYGRITAGAALALKGRTLLLYASPLFNR ECCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEECCEEEEECCCEEEEEECCCCCC ADDASRWKDAYDANFAAITKLNEGNFGLAYEGNGGEDNAKNWARMFATYTGGSEAVFVTL CCCHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHEEEECCCCCEEEEEE YNNVSPIASQNINRYNLWEQGIRPGNINGGGGKTPTAEIIDIFPMIDGKKPMESGVHYDP ECCCCCHHHCCCCEECHHHHCCCCCCCCCCCCCCCHHHHEEEEECCCCCCHHHCCCCCCH KKFFLNRDPRFYRTFAFPGVEWKFNSGNVDFSGATMSGLCPTRYTSGANYELWNYCWYTT HHHEECCCCCEEEEEECCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEE ADERNNPSRSGFAADMLGTKNRGVYVRKRSDDFDLGTSLYVFTDNSSGDQQGFRRSAAPY CCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHCCCCH MEIRYAEVLLNLAESACGAGGTYHAEGVKALKAVRGRVGYTSANNYGLDAAIETDRAKLF HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHH EAILYERQVELAFEGKRAYDMRRWMLFDGGVGQGALNASWALSGFGGNTCTYLGVTPMNE HHHHHHHHEEEEECCCHHHCEEEEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCCC RGKRYRIEINVEGTGSANNDSDPIKNVERPAALTLNEKIATEADGETILDPAVSSICTFY CCCEEEEEEEEEECCCCCCCCCHHHHCCCCCEEEECHHHCCCCCCCCHHHHHHHHHHHHH DTYFSRKDISLDGNVLDINPYFQPRYYFFGLRQSAQQTNATLYQTIGWEDYAHGGMGTFD HHHHCCCCCCCCCCEEEECCCCCCCEEEEEEHHHHHHCCCEEEEECCCCHHCCCCCCCCC PLAE CCCC >Mature Secondary Structure MVTGLICFTGCSDDFLKDKKVYGSYDASVVYENYETAKSRVDFLYQSLLPSSTGGSNALT CCEEEEEEECCCHHHHCCCHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHH DITSAGIDDDFSKCTEEYGDYSIFNDPTASLTIQTVPDYFYVINSERSPWGRIRECNNVI HHHHCCCCHHHHHHHHHHCCEEEECCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHH EGVTGSATLSQTEKEQLLGQAYFFRAWRYYLLVKMYGGVPIVDHVQNPVIGDGNGENLVI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEECCCCCEEEE PRSSTKACIDFICDDLELAASYLPARWQNEGQDYGRITAGAALALKGRTLLLYASPLFNR ECCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEECCEEEEECCCEEEEEECCCCCC ADDASRWKDAYDANFAAITKLNEGNFGLAYEGNGGEDNAKNWARMFATYTGGSEAVFVTL CCCHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHEEEECCCCCEEEEEE YNNVSPIASQNINRYNLWEQGIRPGNINGGGGKTPTAEIIDIFPMIDGKKPMESGVHYDP ECCCCCHHHCCCCEECHHHHCCCCCCCCCCCCCCCHHHHEEEEECCCCCCHHHCCCCCCH KKFFLNRDPRFYRTFAFPGVEWKFNSGNVDFSGATMSGLCPTRYTSGANYELWNYCWYTT HHHEECCCCCEEEEEECCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEE ADERNNPSRSGFAADMLGTKNRGVYVRKRSDDFDLGTSLYVFTDNSSGDQQGFRRSAAPY CCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHCCCCH MEIRYAEVLLNLAESACGAGGTYHAEGVKALKAVRGRVGYTSANNYGLDAAIETDRAKLF HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHH EAILYERQVELAFEGKRAYDMRRWMLFDGGVGQGALNASWALSGFGGNTCTYLGVTPMNE HHHHHHHHEEEEECCCHHHCEEEEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCCC RGKRYRIEINVEGTGSANNDSDPIKNVERPAALTLNEKIATEADGETILDPAVSSICTFY CCCEEEEEEEEEECCCCCCCCCHHHHCCCCCEEEECHHHCCCCCCCCHHHHHHHHHHHHH DTYFSRKDISLDGNVLDINPYFQPRYYFFGLRQSAQQTNATLYQTIGWEDYAHGGMGTFD HHHHCCCCCCCCCCEEEECCCCCCCEEEEEEHHHHHHCCCEEEEECCCCHHCCCCCCCCC PLAE CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA