Click here to switch to the map view.

The map label for this gene is ugpQ [H]

Identifier: 29165616

GI number: 29165616

Start: 43717

End: 44460

Strand: Direct

Name: ugpQ [H]

Synonym: SA0036

Alternate gene names: 29165616

Gene position: 43717-44460 (Clockwise)

Preceding gene: 15925742

Following gene: 15925744

Centisome position: 1.55

GC content: 33.47

Gene sequence:

>744_bases
ATGCTAACTGTATATGGACATAGAGGATTACCTAGTAAAGCTCCGGAAAATACAATTGCATCATTTAAAGCTGCTTCAGA
AGTAGAAGGTATAAACTGGTTGGAGTTAGATGTTGCAATTACAAAAGATGAACAACTGATTATCATTCATGATGATTATT
TAGAACGGACTACAAATATGTCCGGGGAAATAACTGAATTGAATTATGATGAAATTAAAGATGCTTCTGCAGGATCTTGG
TTTGGTGAAAAATTCAAAGATGAACATTTGCCAACTTTCGATGATGTAGTAAAAATAGCAAATGAATATAATATGAATTT
AAATGTAGAATTAAAAGGTATTACTGGACCGAATGGACTAGCACTTTCTAAAAGTATGGTTAAGCAAGTGGAAGAACAAT
TAACAAACTTAAATCAGAATCAAGAAGTGCTCATTTCAAGCTTTAATGTTGTGCTTGTTAAACTTGCAGAAGAAATCATG
CCACAATATAACAGAGCAGTTATATTCCATACAACTTCGTTTCGTGAAGACTGGAGAACACTTTTAGATTACTGTAATGC
TAAAATAGTAAACACTGAAGATGCCAAACTTACTAAAGCAAAAGTAAAAATGGTAAAAGAAGCGGGTTATGAATTGAACG
TATGGACTGTAAACAAACCAGCACGTGCAAACCAACTTGCTAATTGGGGAGTTGATGGTATCTTTACAGACAATGCAGAT
AAAATGGTGCATTTGTCTCAATAG

Upstream 100 bases:

>100_bases
TATTTATGATATTCATCTCTTTTTAATGGAAATAAAAGTGCGATTAATGTGATAATACAGTTACGTTAATTAAAAAAATA
AAAATGCAAGGAGAGGTAAT

Downstream 100 bases:

>100_bases
AAAGTTAGAGGTGAGTCTTACGTTTCAGTGACGGTAGACTTACCTTTAACATGTTACATACTAAAAAATTAATTTGAATA
AGAAAGAGAGACATATATGA

Product: hypothetical protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDEQLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSW
FGEKFKDEHLPTFDDVVKIANEYNMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIM
PQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVNKPARANQLANWGVDGIFTDNAD
KMVHLSQ

Sequences:

>Translated_247_residues
MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDEQLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSW
FGEKFKDEHLPTFDDVVKIANEYNMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIM
PQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVNKPARANQLANWGVDGIFTDNAD
KMVHLSQ
>Mature_247_residues
MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDEQLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSW
FGEKFKDEHLPTFDDVVKIANEYNMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIM
PQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVNKPARANQLANWGVDGIFTDNAD
KMVHLSQ

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycerophosphoryl diester phosphodiesterase family [H]

Homologues:

Organism=Homo sapiens, GI33457301, Length=265, Percent_Identity=25.2830188679245, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7706617, Length=114, Percent_Identity=29.8245614035088, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1789858, Length=237, Percent_Identity=35.4430379746835, Blast_Score=145, Evalue=3e-36,
Organism=Caenorhabditis elegans, GI17542344, Length=254, Percent_Identity=25.5905511811024, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17561436, Length=247, Percent_Identity=23.8866396761134, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27900; Mature: 27900

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDEQLIIIHDDYLERTTNM
CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEECHHHHHHCCC
SGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANEYNMNLNVELKGITGPNGL
CCCEEECCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCC
ALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIMPQYNRAVIFHTTSFREDWRT
HHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
LLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVNKPARANQLANWGVDGIFTDNAD
HHHHHCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCEEEECCCC
KMVHLSQ
CEEEECC
>Mature Secondary Structure
MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDEQLIIIHDDYLERTTNM
CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEECHHHHHHCCC
SGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANEYNMNLNVELKGITGPNGL
CCCEEECCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCC
ALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIMPQYNRAVIFHTTSFREDWRT
HHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
LLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVNKPARANQLANWGVDGIFTDNAD
HHHHHCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCEEEECCCC
KMVHLSQ
CEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2541415; 1851953; 8041620; 9278503; 3062310 [H]