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The map label for this gene is lptF [H]

Identifier: 29144758

GI number: 29144758

Start: 4661331

End: 4662431

Strand: Direct

Name: lptF [H]

Synonym: t4513

Alternate gene names: 29144758

Gene position: 4661331-4662431 (Clockwise)

Preceding gene: 29144754

Following gene: 29144759

Centisome position: 97.27

GC content: 55.22

Gene sequence:

>1101_bases
GTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTACTTTTGATCTTCTT
TTGTCAAAAGTTAGTGAGGATTCTCGGCGCGGCGGTTGACGGCGATATTCCCGCAAATCTGGTGCTCTCGCTTCTGGGGC
TGGGCGTACCGGAAATGGCGCAGCTCATCCTGCCTTTAAGCCTGTTCCTGGGGCTGCTGATGACGCTGGGCAAACTGTAT
ACCGAAAGTGAAATTACGGTCATGCACGCCTGTGGGTTGAGCAAAGCCGTGCTGGTAAAGGCCGCCATGGTACTGGCGTT
ATTTACCGGTATCCTTGCGGCGGTTAACGTGATGTGGGCCGGCCCCTGGTCGTCAAAACACCAGGATGAAGTGCTGGCGG
AGGCGAAAGCGAACCCCGGTATGGCGGCGTTGGCGCAGGGGCAATTCCAGCAGGCGACCAACGGCAGCTCGGTGCTGTTT
ATCGAAAGCGTTGACGGCAGCGACTTCCACGATGTTTTCCTGGCGCAAATTCGTCCTAAGGGCAATGCTCGTCCTTCTGT
GGTAGTGGCCGATTCCGGACACCTTACTCAGTTGCGCGATGGTTCCCAGGTTGTCACCTTAAACAAAGGGACGCGTTTTG
AAGGGACGGCGTTGCTACGCGATTTTCGCATCACCGACTTCCAGAACTATCAGGCGATTATTGGTCATCAGGCCGTGGCG
CTGGACCCGAACGATACCGACCAGATGGACATGCGCACGCTGTGGAATACCGACAACGATCGCGCTCGCGCCGAGCTGCA
CTGGCGTATCACGTTAGTCTTTACCGTATTTATGATGGCGCTGATGGTCGTGCCGCTCAGCGTGGTGAATCCACGTCAGG
GGCGCGTCTTGTCTATGTTGCCCGCTATGCTGCTTTATCTGCTGTTCTTCCTGATCCAGACCTCCATTAAATCGAATGGC
GGTAAAGGCAAACTGGACCCGGTTATCTGGATGTGGGCGGTCAACCTGATCTATCTGGCGTTGGCGATTGGTTTAAACCT
GTGGGATACGGTGCCGGTTCGCCGCCTGCGTGCCCGTTTTCTGCGTAAAGGAGCGGTATAA

Upstream 100 bases:

>100_bases
CTTAGCGATGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAATTCCAGCAAAAAAATGGT
TTTTTACGGGCGTATTTAAA

Downstream 100 bases:

>100_bases
TGCAGCCATTTGGTGTGCTTGACCGCTATATCGGTAAAACCATTTTTACCACCATCATGATGACGTTGTTCATGCTGGTG
TCGCTCTCCGGGATCATCAA

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLY
TESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF
IESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVA
LDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSIKSNG
GKGKLDPVIWMWAVNLIYLALAIGLNLWDTVPVRRLRARFLRKGAV

Sequences:

>Translated_366_residues
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLY
TESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF
IESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVA
LDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSIKSNG
GKGKLDPVIWMWAVNLIYLALAIGLNLWDTVPVRRLRARFLRKGAV
>Mature_366_residues
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLY
TESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF
IESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVA
LDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSIKSNG
GKGKLDPVIWMWAVNLIYLALAIGLNLWDTVPVRRLRARFLRKGAV

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=366, Percent_Identity=95.3551912568306, Blast_Score=645, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 40395; Mature: 40395

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMA
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPK
CCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCC
GNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVA
CCCCCEEEEECCCCEEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHCCCEEE
LDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML
ECCCCCCHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
PAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALAIGLNLWDTVPVRRLRARF
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHH
LRKGAV
HHHCCC
>Mature Secondary Structure
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMA
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPK
CCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCC
GNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVA
CCCCCEEEEECCCCEEEECCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHCCCEEE
LDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML
ECCCCCCHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
PAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALAIGLNLWDTVPVRRLRARF
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHH
LRKGAV
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]