| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
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The map label for this gene is licR [H]
Identifier: 29144727
GI number: 29144727
Start: 4628363
End: 4630336
Strand: Direct
Name: licR [H]
Synonym: t4482
Alternate gene names: 29144727
Gene position: 4628363-4630336 (Clockwise)
Preceding gene: 29144726
Following gene: 29144728
Centisome position: 96.59
GC content: 53.9
Gene sequence:
>1974_bases ATGTGCGTCAGTTACTCGCTATCGTCCGGTCGCGTGTCGGCTAATCATGAGGAGAGAGACGTGCGATTCCCCAACCAACG TTTAGCGCAGCTATTTGCGATGCTGCAAAACGAGACGCTGCCGCAGGACGAGCTGGCGCAGCGGTTGTCGGTCTCCACGC GTACCGTTCGGGCGGATATCGCCGCGCTGAACATGTTGCTGACGCCGCATGGCGCGCAATTTACTCTCAGTCGCGGCAAC GGGTATCAACTCAAAATTGATGATCCGGCACGTTATCAATCCCTGCAAACGCAGCAATCTCCCACGCTGGCGCGCGGTCC GCGCACCAGCCAGGAGCGGATCCACTATTTGCTGGCGCGTTTTTTAACCTCCGCCTTCTCGCTGAAGCTGGAGGATTTAG CAGATGAATGGTTTGTCAGCCGTGCGACGTTGCAGAACGATATGGCGGACGTGCGCGAGCATTTGCTGCGTTATCATCTG ACGCTGGAAACGCGTCCGCGTCATGGCATGAAATTGTTTGGCGGAGAGATGGCGATTCGCGCCTGTCTGACCGACCTTTT ATGGACGCTGGTGCAGCAGGAGCCCTCCCATCCGTTAATTGTTAGTACCACGCTGAACACCGAGGTGTCTCAACGGCTGC AGTCTCTTTTGCCGGATATTTTCTCTCATTGTCAAATCCGCCTGACCGATGAGGGCGAGCTGTTTCTGCGTTTATACTGC GCGGTGGCGGTACGGCGTATTCGCGAGGGGTATCCGTTATCGGAATGCGTGGCAGAGGAGGTCGATGAAAAGGTGCGCCA TGCGGCGCATGAGATTGCGGAGCTACTACAACAGCTGGCTGACAAGCCGCTGTCGGAGCCGGAAGTAAGCTGGCTGAAGG TGCATATTGCCGCCCGCCAGGTACAGGAGATTGCCCCCAGCGCCATTAATGCCGATGATGAAGAGGCGCTGGTGCACTAT ATCCTCAATTTTATTAATACCCAGTACAACTATAACCTGTTGAATGATAAACAGCTTCACGCGGACTTGCTGACCCACAT CAAAACGATGATCACCCGCGTGCGCTACCAGATCATGATCCCCAACCCACTACTGGAAAATATTAAGCAGCACTATCCGA TGGCGTGGGATATGACGTTGGCGGCGATATCGAGTTGGGGAAAATACACGCCGTATACCATTAGCGAAAACGAAATCGGT TTTCTGGTGCTGCATATTGGCGTTGGGCTGGAACGTAGTTACAACATTGGCTACCAGCGGCAGCCGCAGGTACTGCTGGT GTGCGATGCTGGTAATGCGATGGTGCGGATGATTGAAGCGGTACTGGCGCGGAAATACCCGCAGATTGAGATTGCCCGCA CTCTGACGCTACGCGACTATGAGGCGCGGGACAGTATGGTGGAGGATTTTGTGATTTCCACAGCGCGGATCGGCGAAAAA GATAAGCCGGTCATCATGATCGCGCCCTTTCCTACCGACTATCAATTGGAGCAGATCGGTAAGCTGGTGCTGGTGGACAG AACCCGTCCGTGGATGCTGGATAAATATTTCGATGCCTCGCATTTTCGCATCGTGGAGGGGGAAATAAATCAACAGACGC TGTTTAAAACGCTGTGCGATCAGTTGCACGAGGAAGGCTTTGTTGATGCGGCGTTTCTCGATTCGGTTATTGAACGTGAA GCTATCGTCAGTACGTTATTAGGCGACGGGATTGCCTTGCCACACGCGCTGGGGCTGCTGGCGAAGAAAACGGTGGTTTA TACGGTGCTCGCGCCGCAGGGGATTGCCTGGGGTGACGAAACGGCGCACGTTATTTTTTTACTCGCCATCAGCAAAAGTG AATATGAAGAGGCGATGGCCATCTACGATATTTTCGTCACTTTCCTGCGCGAACGCGCCATGACGCGCCTCTGCGCATGT CAGAATTTTACGCAATTTAAAACGGTCGCAATGGAGTGTGTGAGTCGCTTTTGA
Upstream 100 bases:
>100_bases GAGATTCTGCACATCGCCCTTGATGCAGGTGTAAGCAAAATCATTCCTCACATTTATAGTTCGATTATTGATAAGGTGAG CGGCAACACCCGTGCGGACG
Downstream 100 bases:
>100_bases GAGGCGTTATCCAGAATTCGATGTAATGCGAATGTAATGCTAAACTGCATTACACATTCGATTCTCCTGGAGGCATAATG GCCACGCTGAACGTCCGTCT
Product: BglB family transcriptional antiterminator
Products: NA
Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]
Number of amino acids: Translated: 657; Mature: 657
Protein sequence:
>657_residues MCVSYSLSSGRVSANHEERDVRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADIAALNMLLTPHGAQFTLSRGN GYQLKIDDPARYQSLQTQQSPTLARGPRTSQERIHYLLARFLTSAFSLKLEDLADEWFVSRATLQNDMADVREHLLRYHL TLETRPRHGMKLFGGEMAIRACLTDLLWTLVQQEPSHPLIVSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRLYC AVAVRRIREGYPLSECVAEEVDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHIAARQVQEIAPSAINADDEEALVHY ILNFINTQYNYNLLNDKQLHADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTLAAISSWGKYTPYTISENEIG FLVLHIGVGLERSYNIGYQRQPQVLLVCDAGNAMVRMIEAVLARKYPQIEIARTLTLRDYEARDSMVEDFVISTARIGEK DKPVIMIAPFPTDYQLEQIGKLVLVDRTRPWMLDKYFDASHFRIVEGEINQQTLFKTLCDQLHEEGFVDAAFLDSVIERE AIVSTLLGDGIALPHALGLLAKKTVVYTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCAC QNFTQFKTVAMECVSRF
Sequences:
>Translated_657_residues MCVSYSLSSGRVSANHEERDVRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADIAALNMLLTPHGAQFTLSRGN GYQLKIDDPARYQSLQTQQSPTLARGPRTSQERIHYLLARFLTSAFSLKLEDLADEWFVSRATLQNDMADVREHLLRYHL TLETRPRHGMKLFGGEMAIRACLTDLLWTLVQQEPSHPLIVSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRLYC AVAVRRIREGYPLSECVAEEVDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHIAARQVQEIAPSAINADDEEALVHY ILNFINTQYNYNLLNDKQLHADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTLAAISSWGKYTPYTISENEIG FLVLHIGVGLERSYNIGYQRQPQVLLVCDAGNAMVRMIEAVLARKYPQIEIARTLTLRDYEARDSMVEDFVISTARIGEK DKPVIMIAPFPTDYQLEQIGKLVLVDRTRPWMLDKYFDASHFRIVEGEINQQTLFKTLCDQLHEEGFVDAAFLDSVIERE AIVSTLLGDGIALPHALGLLAKKTVVYTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCAC QNFTQFKTVAMECVSRF >Mature_657_residues MCVSYSLSSGRVSANHEERDVRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADIAALNMLLTPHGAQFTLSRGN GYQLKIDDPARYQSLQTQQSPTLARGPRTSQERIHYLLARFLTSAFSLKLEDLADEWFVSRATLQNDMADVREHLLRYHL TLETRPRHGMKLFGGEMAIRACLTDLLWTLVQQEPSHPLIVSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRLYC AVAVRRIREGYPLSECVAEEVDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHIAARQVQEIAPSAINADDEEALVHY ILNFINTQYNYNLLNDKQLHADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTLAAISSWGKYTPYTISENEIG FLVLHIGVGLERSYNIGYQRQPQVLLVCDAGNAMVRMIEAVLARKYPQIEIARTLTLRDYEARDSMVEDFVISTARIGEK DKPVIMIAPFPTDYQLEQIGKLVLVDRTRPWMLDKYFDASHFRIVEGEINQQTLFKTLCDQLHEEGFVDAAFLDSVIERE AIVSTLLGDGIALPHALGLLAKKTVVYTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCAC QNFTQFKTVAMECVSRF
Specific function: Positive regulator of the licABCH operon [H]
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-2 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013196 - InterPro: IPR007737 - InterPro: IPR011608 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR013011 - InterPro: IPR003501 - InterPro: IPR011991 [H]
Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 74958; Mature: 74958
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: PS00894 HTH_DEOR_1 ; PS00372 PTS_EIIA_TYPE_2_HIS ; PS51094 PTS_EIIA_TYPE_2 ; PS51099 PTS_EIIB_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCVSYSLSSGRVSANHEERDVRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADI CEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AALNMLLTPHGAQFTLSRGNGYQLKIDDPARYQSLQTQQSPTLARGPRTSQERIHYLLAR HHHHHHCCCCCCEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH FLTSAFSLKLEDLADEWFVSRATLQNDMADVREHLLRYHLTLETRPRHGMKLFGGEMAIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHH ACLTDLLWTLVQQEPSHPLIVSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRLYC HHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHH AVAVRRIREGYPLSECVAEEVDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHIAARQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH VQEIAPSAINADDEEALVHYILNFINTQYNYNLLNDKQLHADLLTHIKTMITRVRYQIMI HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEC PNPLLENIKQHYPMAWDMTLAAISSWGKYTPYTISENEIGFLVLHIGVGLERSYNIGYQR CCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCC QPQVLLVCDAGNAMVRMIEAVLARKYPQIEIARTLTLRDYEARDSMVEDFVISTARIGEK CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCC DKPVIMIAPFPTDYQLEQIGKLVLVDRTRPWMLDKYFDASHFRIVEGEINQQTLFKTLCD CCCEEEEECCCCCCCHHHCCCEEEEECCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHH QLHEEGFVDAAFLDSVIEREAIVSTLLGDGIALPHALGLLAKKTVVYTVLAPQGIAWGDE HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCC TAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCACQNFTQFKTVAMECVSRF CCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC >Mature Secondary Structure MCVSYSLSSGRVSANHEERDVRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADI CEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AALNMLLTPHGAQFTLSRGNGYQLKIDDPARYQSLQTQQSPTLARGPRTSQERIHYLLAR HHHHHHCCCCCCEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH FLTSAFSLKLEDLADEWFVSRATLQNDMADVREHLLRYHLTLETRPRHGMKLFGGEMAIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHH ACLTDLLWTLVQQEPSHPLIVSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRLYC HHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHH AVAVRRIREGYPLSECVAEEVDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHIAARQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH VQEIAPSAINADDEEALVHYILNFINTQYNYNLLNDKQLHADLLTHIKTMITRVRYQIMI HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEC PNPLLENIKQHYPMAWDMTLAAISSWGKYTPYTISENEIGFLVLHIGVGLERSYNIGYQR CCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCC QPQVLLVCDAGNAMVRMIEAVLARKYPQIEIARTLTLRDYEARDSMVEDFVISTARIGEK CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCC DKPVIMIAPFPTDYQLEQIGKLVLVDRTRPWMLDKYFDASHFRIVEGEINQQTLFKTLCD CCCEEEEECCCCCCCHHHCCCEEEEECCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHH QLHEEGFVDAAFLDSVIEREAIVSTLLGDGIALPHALGLLAKKTVVYTVLAPQGIAWGDE HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCC TAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCACQNFTQFKTVAMECVSRF CCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8990303; 8969509; 9384377; 10438772 [H]