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The map label for this gene is vexD

Identifier: 29144596

GI number: 29144596

Start: 4496159

End: 4497463

Strand: Reverse

Name: vexD

Synonym: t4345

Alternate gene names: 29144596

Gene position: 4497463-4496159 (Counterclockwise)

Preceding gene: 29144597

Following gene: 29144595

Centisome position: 93.85

GC content: 46.28

Gene sequence:

>1305_bases
GTGGAAAATTCAGAACGTATTAAAAAATGGAAAGAAGAAAGAGCGAAGGTAGCACAAGAAAGCCGAGCCTCGCGGCTACA
ACAAAAAGAGGATGAACGCGCCCTTCGCCAGACGGAAAAATCGGCCGATGCAAAAAGTCATCATAACCCAGACGCCGGGT
GGTCTGCGACGGATGCTGATTCTGTCCGTAGAGCGTCATTAGTTATTAAAGAGCGACGTGTTCAGCAAGCCAAGCAATCG
CTACGTCGGCTCTTTCTTTATATTGCTTTGCCGCTGCTGGTTATTATGCTTATGTCGTGGATTTTAACATCGCATTTTTA
TAGTGCGGATGCCACCTTTATTGTGCAAACTGATGCCAGCCAGGATAATTTTTCTGGAACATCTTTCTTTGGTGCAGGCA
ATAAGATGTCGGAGGGCTTTCAGGTTCGCGAGTTTATACTTTCGAAAGAAATGATGGATCGGATGGAAAAAGAGCTCGGT
TTTTTATCTTATTTCGCGCAAGACGATATCGCATTATTTTCCCGCTTCCACGCGCCGCTGGGTATTAATGATGATCCTTA
TCGTTACTATTTATCAAAAGTCTCGGTTGCTGTCGATATTCAACAGGGCATGCTGCGTTTAAACGTGAAGGCACGGAGTG
CGAAACAGGCTGAGTTTTTTGCCCAGCGCATTCTGTCTTTTGCTGAACAGCACGTTAATACCGTTTCAGCGCGGATGCAG
AAGGAACGGATTTTGTGGCTGGAAAATGATGTTAAATCGGCCCAAGAGAATCTGGGGGCAGCTCGACTTGAATTGCTAAA
AATACAGCATATACAAAAAGATATTGACCCGAAGGAAACCATAACCGCTATTTATCAATTAATTGCTGGCTTTGAAACGC
AGTTGGCGGAGGCGAAAGCGGAATACGCGCAATTAATGGTGAATGGTTTGGATCAGAACCCCCTTATTCCTCGCCTGTCG
GCCAAAATCAAGGTACTGGAAAAGCAGATCGGCGAACAACGTAACCGCTTGTCAAATAAGTTAGGGTCGCAAGGCTCTTC
AGAAAGCCTGTCCTTATTTGAAGATCTTCGCCTGCAGAGCGAGATCGCCAAAGCACGCTGGGAATCTGCCTTACAGACCT
TACAGCAAGGGAAGCTTCAAGCTCTACGTGAGAGACAGTATTTGCTGATCATTTCTCAACCGATGGCTGAGTCTGACACC
ACTCGCTATGCCGATGGAACAAAGTGGTTACTGTTCTTCGTGTTGCTGGGCATCACGTACCTGGTGACTTCTCTCCTGAT
AACCATCAGGCGGATGCGTGAATAA

Upstream 100 bases:

>100_bases
CAGGCAACTGCGCTTTTTGAACAATATCAGTCAAATCAGGCGACGATTCAAACTGAAGATTATTCCTTTGATATATAATT
AGTAAATATACGGATAGAGT

Downstream 100 bases:

>100_bases
GGCTGAGTAAGGAAATATAATGAGCTTGCACTCTACATTTAAAAAAATATCGCCAACCACCCTACTCAAACAAGAGGATT
GGGAGGGGCTATGCCTCTAT

Product: VI polysaccharide export inner-membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MENSERIKKWKEERAKVAQESRASRLQQKEDERALRQTEKSADAKSHHNPDAGWSATDADSVRRASLVIKERRVQQAKQS
LRRLFLYIALPLLVIMLMSWILTSHFYSADATFIVQTDASQDNFSGTSFFGAGNKMSEGFQVREFILSKEMMDRMEKELG
FLSYFAQDDIALFSRFHAPLGINDDPYRYYLSKVSVAVDIQQGMLRLNVKARSAKQAEFFAQRILSFAEQHVNTVSARMQ
KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLS
AKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQYLLIISQPMAESDT
TRYADGTKWLLFFVLLGITYLVTSLLITIRRMRE

Sequences:

>Translated_434_residues
MENSERIKKWKEERAKVAQESRASRLQQKEDERALRQTEKSADAKSHHNPDAGWSATDADSVRRASLVIKERRVQQAKQS
LRRLFLYIALPLLVIMLMSWILTSHFYSADATFIVQTDASQDNFSGTSFFGAGNKMSEGFQVREFILSKEMMDRMEKELG
FLSYFAQDDIALFSRFHAPLGINDDPYRYYLSKVSVAVDIQQGMLRLNVKARSAKQAEFFAQRILSFAEQHVNTVSARMQ
KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLS
AKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQYLLIISQPMAESDT
TRYADGTKWLLFFVLLGITYLVTSLLITIRRMRE
>Mature_434_residues
MENSERIKKWKEERAKVAQESRASRLQQKEDERALRQTEKSADAKSHHNPDAGWSATDADSVRRASLVIKERRVQQAKQS
LRRLFLYIALPLLVIMLMSWILTSHFYSADATFIVQTDASQDNFSGTSFFGAGNKMSEGFQVREFILSKEMMDRMEKELG
FLSYFAQDDIALFSRFHAPLGINDDPYRYYLSKVSVAVDIQQGMLRLNVKARSAKQAEFFAQRILSFAEQHVNTVSARMQ
KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLS
AKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQYLLIISQPMAESDT
TRYADGTKWLLFFVLLGITYLVTSLLITIRRMRE

Specific function: May form an ATP-driven capsule polysaccharide export apparatus, in association with the vexA, vexB and vexC proteins

COG id: COG3524

COG function: function code M; Capsule polysaccharide export protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexC/CtrB/KpsE family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VEXD_SALTI (P43111)

Other databases:

- EMBL:   D14156
- EMBL:   AL627283
- EMBL:   AE014613
- PIR:   I36892
- RefSeq:   NP_458731.1
- RefSeq:   NP_807938.1
- GeneID:   1067052
- GeneID:   1250853
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t4345
- KEGG:   sty:STY4652
- HOGENOM:   HBG494824
- OMA:   SEAHFIV
- ProtClustDB:   PRK15178
- BioCyc:   SENT209261:T4345-MONOMER
- BioCyc:   SENT220341:STY4652-MONOMER
- InterPro:   IPR005705
- TIGRFAMs:   TIGR01010

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49782; Mature: 49782

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x124a9180)-; HASH(0x129aab18)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENSERIKKWKEERAKVAQESRASRLQQKEDERALRQTEKSADAKSHHNPDAGWSATDAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHH
SVRRASLVIKERRVQQAKQSLRRLFLYIALPLLVIMLMSWILTSHFYSADATFIVQTDAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
QDNFSGTSFFGAGNKMSEGFQVREFILSKEMMDRMEKELGFLSYFAQDDIALFSRFHAPL
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GINDDPYRYYLSKVSVAVDIQQGMLRLNVKARSAKQAEFFAQRILSFAEQHVNTVSARMQ
CCCCCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQS
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EIAKARWESALQTLQQGKLQALRERQYLLIISQPMAESDTTRYADGTKWLLFFVLLGITY
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
LVTSLLITIRRMRE
HHHHHHHHHHHHCH
>Mature Secondary Structure
MENSERIKKWKEERAKVAQESRASRLQQKEDERALRQTEKSADAKSHHNPDAGWSATDAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHH
SVRRASLVIKERRVQQAKQSLRRLFLYIALPLLVIMLMSWILTSHFYSADATFIVQTDAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
QDNFSGTSFFGAGNKMSEGFQVREFILSKEMMDRMEKELGFLSYFAQDDIALFSRFHAPL
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GINDDPYRYYLSKVSVAVDIQQGMLRLNVKARSAKQAEFFAQRILSFAEQHVNTVSARMQ
CCCCCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQS
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EIAKARWESALQTLQQGKLQALRERQYLLIISQPMAESDTTRYADGTKWLLFFVLLGITY
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
LVTSLLITIRRMRE
HHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8331073; 11677608; 12644504