Click here to switch to the map view.

The map label for this gene is exoX [C]

Identifier: 29144582

GI number: 29144582

Start: 4486672

End: 4487256

Strand: Reverse

Name: exoX [C]

Synonym: t4330

Alternate gene names: 29144582

Gene position: 4487256-4486672 (Counterclockwise)

Preceding gene: 29144583

Following gene: 29144581

Centisome position: 93.64

GC content: 43.93

Gene sequence:

>585_bases
ATGAATACCGATAAGATGACAATTAGCCAACGTGCAAATCAATGGCTTGATAATGACTACTTATTTATTGATACCGAAAC
GACCGGGTTGGGTGATGATGCGGAAATAGTTGAAATATGCATTATTGATAGTCATGGGTTTATTATGCTTAATACGCTTA
TTAAGCCCACTAAGCCTATCCCTGATGAAGCAATAGCAATTCATGGAATTACTAATGAAATGGTTGCTTTTGCCCCTGCC
TGGACTGATATATGCGGGGCAGTGGAGGAACTATTTCGGCGCTTTGGGTTTGTTATCTATAACGCCGATTTTGATCTCCG
GTTAATTCGTCAGACCTACGCATTGAATGAAAGACCTTCTGAAGGTGCGCCATGGATGCTTGCTGCTCATTCTGTTTGCG
CGATGAAGCTTTATGCAGAGTATCGAGGCGAGCCGGGACGATTTAATGGCTATAAATGGCATAAGCTGGTTGATGCTGCT
GCGCATGAAGGTGTTGTAGTTGAAGGTAAGGCGCACCGTGCTTTAGCTGATTGCAAAATGACGTTAGGGCTTGTCCGTGC
TCTGGCTAAAGGTGGTGCTAAATGA

Upstream 100 bases:

>100_bases
TCCCGCCAGCACGCCGCCGCGCCATTCCGGGCGTGCAGTGCTGCGTCACCTGTCAGGAAATCGCAGAGCTGAAAGGCAAA
CACTACAATGGAGGTGCTGT

Downstream 100 bases:

>100_bases
GCACCATCCTGAAATGGGCGGGAAATAAAACCGCCATCATGCCGGAACTGATTAAGCATCTGCCTGCAGGTCAGCGACTG
GTGGAGCCGTTCGCCGGTTC

Product: exonuclease

Products: NA

Alternate protein names: Exonuclease; DNA Polymerase III Epsilon Chain; DNA Polymerase III Subunit Epsilon; DNA Polymerase III Epsilon Subunit; DNA Polymerase III Alpha Subunit; DNA-Directed DNA Polymerase; Exoribonuclease YacC; Transposase; Orf81 Bacteriophage; DNA Polymerase III Fragment; Bacteriophage

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MNTDKMTISQRANQWLDNDYLFIDTETTGLGDDAEIVEICIIDSHGFIMLNTLIKPTKPIPDEAIAIHGITNEMVAFAPA
WTDICGAVEELFRRFGFVIYNADFDLRLIRQTYALNERPSEGAPWMLAAHSVCAMKLYAEYRGEPGRFNGYKWHKLVDAA
AHEGVVVEGKAHRALADCKMTLGLVRALAKGGAK

Sequences:

>Translated_194_residues
MNTDKMTISQRANQWLDNDYLFIDTETTGLGDDAEIVEICIIDSHGFIMLNTLIKPTKPIPDEAIAIHGITNEMVAFAPA
WTDICGAVEELFRRFGFVIYNADFDLRLIRQTYALNERPSEGAPWMLAAHSVCAMKLYAEYRGEPGRFNGYKWHKLVDAA
AHEGVVVEGKAHRALADCKMTLGLVRALAKGGAK
>Mature_194_residues
MNTDKMTISQRANQWLDNDYLFIDTETTGLGDDAEIVEICIIDSHGFIMLNTLIKPTKPIPDEAIAIHGITNEMVAFAPA
WTDICGAVEELFRRFGFVIYNADFDLRLIRQTYALNERPSEGAPWMLAAHSVCAMKLYAEYRGEPGRFNGYKWHKLVDAA
AHEGVVVEGKAHRALADCKMTLGLVRALAKGGAK

Specific function: Capable Of Degrading Both Single-Strand And Double- Strand DNA With 3' To 5' Polarity. Has Higher Affinity For ssDNA Ends Than For dsDNA. May Facilitate Recombinational Repair By Pre- Synaptic And/Or Post-Synaptic DNA Degradation. [C]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.11.- [C]

Molecular weight: Translated: 21590; Mature: 21590

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTDKMTISQRANQWLDNDYLFIDTETTGLGDDAEIVEICIIDSHGFIMLNTLIKPTKPI
CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCC
PDEAIAIHGITNEMVAFAPAWTDICGAVEELFRRFGFVIYNADFDLRLIRQTYALNERPS
CCCEEEEECCCCHHHEECCHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHCCCCCC
EGAPWMLAAHSVCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADCKM
CCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHH
TLGLVRALAKGGAK
HHHHHHHHHHCCCC
>Mature Secondary Structure
MNTDKMTISQRANQWLDNDYLFIDTETTGLGDDAEIVEICIIDSHGFIMLNTLIKPTKPI
CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCC
PDEAIAIHGITNEMVAFAPAWTDICGAVEELFRRFGFVIYNADFDLRLIRQTYALNERPS
CCCEEEEECCCCHHHEECCHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHCCCCCC
EGAPWMLAAHSVCAMKLYAEYRGEPGRFNGYKWHKLVDAAAHEGVVVEGKAHRALADCKM
CCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHH
TLGLVRALAKGGAK
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA