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The map label for this gene is rci [H]

Identifier: 29144508

GI number: 29144508

Start: 4419989

End: 4421140

Strand: Direct

Name: rci [H]

Synonym: t4252

Alternate gene names: 29144508

Gene position: 4419989-4421140 (Clockwise)

Preceding gene: 29144507

Following gene: 29144509

Centisome position: 92.24

GC content: 49.57

Gene sequence:

>1152_bases
ATGTCTCGCCCACAACGCATAAAAAAAATGTCTCTGTCGAAAGCCCTTGATAAATACTACGCCACTGTGTCTGTGCATAA
ACGGGGGCATCAGCAGGAATTCTATCGTGTTAGGGTCATTCAGCGACATCCTTTGGCAGAGAAGATGATGGATGAAATCA
CGACAGTGGATATTGCGTCTTACCGCGATGATCGGTTGTCTCAGGTGAATACGCGTACCGGCCGGTGTATTTCAGGAAAC
ACAGTCCGGCTCGAACTCGCTTTACTGTCATCACTGTATAATCTGGCCAGCGTAGAGTGGGGAACATGCAGAACTAACCC
CGTTGAAATGGTTCGTAAGCCAAAAATATCAGGAGGACGAGATCGACGTTTAACATCACAAGAGGAACGGCGCTTATCCC
GCTACTTCCAGGAACAGAATCCAGCGCTTCACGCCATATTTCACCTCGCCATTGAAACAGCAATGAGACAAGGAGAGATC
TTGTCACTTCGATGGGAACATATCGACCTGCAGCATGGCGTTGCCCATTTGCCAATGACAAAAAACGGCAGTTCGCGAGA
TGTTCCCTTATCCCGCAAAGCGCGTCATTTGCTACAGGGAATGACGGTCGCACTTAGCGGTAATGTTTTTCACTATTCAT
CATCTGGTTTTAAAAGCGCCTGGAGGGTGGCTCTGCAGCGCCTGAATATCGTCGATCTCCATTTTCACGATCTGCGTCAT
GAAGCAATTAGCCGACTGTTTGAACTGGGAACACTCAACGTTATGGAAGTGGCGGCTATTTCCGGCCACCGTTCCCTGAA
TATGCTCAAACGTTATACCCATCTCAGAGCATACCAGCTTGTCAGTAAACTTGACGCTCGCCGAAGACAAACACAAAAGA
TTGCTCCCTATTTTGTCCCTTATCCTGCCTGTATTGAATCCGTTAATGAAGGATCAGATGGCTGTTGTGGTTTTCGTGTT
CACCTACCCGATTTTGACAATCTTTCAGTGTCAGCGGCATCGAGGGAGAGTGCGCTGGAGGCTGCAGGTGTTCTGTTGCT
ACGAACGCTGGCTAAAGCGGCTCAGCGGGGAGAGCGTGTGCCTCGCCCCGGGGATTTGCCGGAAGGCAAGCATGAGCGGG
TAATGATCCATCCTCTTTTGAGTGCTGCCTGA

Upstream 100 bases:

>100_bases
GATACCGGATTGGCACGTATGTCCTTACGAGGATTGAGGGTATTAGAGTTTTTCGTTACGGTGGAGAAAAACCTCAATTC
TTCTCGCAAAGGTATCTGCA

Downstream 100 bases:

>100_bases
TAAATTTGCCGTTACGGATAGTCATTTACGTGATTTATTCTCGTCGTTAAGAGGGTACGCTGCTGCCGTTCATTTTCTGC
AAAAAAGGACAGAGGGGTGG

Product: shufflon-specific DNA recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVNTRTGRCISGN
TVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEI
LSLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH
EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPACIESVNEGSDGCCGFRV
HLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRPGDLPEGKHERVMIHPLLSAA

Sequences:

>Translated_383_residues
MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVNTRTGRCISGN
TVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEI
LSLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH
EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPACIESVNEGSDGCCGFRV
HLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRPGDLPEGKHERVMIHPLLSAA
>Mature_382_residues
SRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIASYRDDRLSQVNTRTGRCISGNT
VRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGRDRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEIL
SLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHE
AISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVPYPACIESVNEGSDGCCGFRVH
LPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERVPRPGDLPEGKHERVMIHPLLSAA

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=219, Percent_Identity=27.3972602739726, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43500; Mature: 43369

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR
CCCHHHHHHHCCCCCEECCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCC
DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEHHCCCEECCCC
KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH
CCCCCCCCCHHHHHHHHHHCCEEEEECCEEEECCCCHHHHHHHHHHHCCEEEEHHHHHHH
EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP
HHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV
CHHHHHHHCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PRPGDLPEGKHERVMIHPLLSAA
CCCCCCCCCCCCEEEEECHHHCC
>Mature Secondary Structure 
SRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMMDEITTVDIAS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR
CCCHHHHHHHCCCCCEECCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCC
DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEHHCCCEECCCC
KNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRH
CCCCCCCCCHHHHHHHHHHCCEEEEECCEEEECCCCHHHHHHHHHHHCCEEEEHHHHHHH
EAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP
HHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTLAKAAQRGERV
CHHHHHHHCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PRPGDLPEGKHERVMIHPLLSAA
CCCCCCCCCCCCEEEEECHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]