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The map label for this gene is pilR

Identifier: 29144503

GI number: 29144503

Start: 4415472

End: 4416557

Strand: Direct

Name: pilR

Synonym: t4246

Alternate gene names: NA

Gene position: 4415472-4416557 (Clockwise)

Preceding gene: 29144502

Following gene: 29144504

Centisome position: 92.14

GC content: 56.35

Gene sequence:

>1086_bases
ATGAGTCCTTTATACCGTCTTCGCCGGGCGCTGGCGCGACGTTTTTTTACGTCCGGATACCGTCTGCGTTTTTACCGCAT
GCTGTCGTTGCAGATGAGAAATGGCGTGAAGTTGTTAGAGGCGCTGGAGCAAATCAGCAATATGTATACCGATTTTGGGC
AGCGGACTCATGGTTTCGGTTTTCTGGTGGACGACTGCCGGGCGGCACTCACTGACAACAGCGGGGATAACTCCCTTGAG
CATGCTCTTGCAAACTGGGTTCCGGCGGAGGAGGCGGCGCTCATCAGCGCGGGTATGTTCAGTGGTCGGTTACCTGAGGC
GCTCGCAGAGGCGGAAATCCTGATTGACTGCCGGCGGCGTATCCGACAGGCGATCATGAGGATGGCCGTTTATCCCCTAG
GTTGCATTGCGATGCTCGGTGGCACGCTGGGTGTTATTCAGACGCAGCTTATTCCAACGCTGGCCGGGATGTCAGATCCG
CAGACATGGACCGGAGTGCTGGGAAGCCTTAACGGCCTGCTGATTTTTTTTACTGAGCATGGCGTGGTGATGGGGGCCGG
GCTGGCACTGTTGGTCGCATGGACCAGGTGGTCCCTGTCGAACTGGATACGTCCGGACCGTCTGCGTCGTCTTGCGGACA
GACATGTACCCTGGGCGGTTTACAGTGATATTCAGGGCGCGATTTTTCTCATCAATATGGGGGCTCTGCTGTGCGCTGGG
GTCAGAACCCTGACTGCGCTGCAGGTTATCCACCGCTTTGCTTCTCCCTGGCTCGTTGTACGTCTGAACGCAGTGATGGA
GGAAGTGGAGGAGGGGGCCTCTTTTGGTATGGCGCTGCGTGAATGTGGTTATGCCTTCCCCTCAAAAGAAGCCGTGAACT
ATCTCTCTATGGTCAGTGGGGACGGGGCCGCTCAGATGATTGCGCGCTTTGGGCAGGAATGGCTCGAGGAAACTGTGAAG
CGAGTTAACCGACGGGGAATAGCCGTGATGCTGTTCTCAATGGTGATGTTATTTGCGCTTATTGGCGTTGTGGTCGTGGC
GGTGATTGAGGCGACTTCGATGACCGAGAGTATGGGGCAGTACTGA

Upstream 100 bases:

>100_bases
TGGTAATTGCAGCCAGCGTCAGAGAGGGGATGAAGCAGGGTGTTGAGGAAGCCATTAAAGAAGGCGTTGCTGCCGGGATG
GCTGCGCTGAAGGAGGTTGC

Downstream 100 bases:

>100_bases
TGTTAAGCAATTCAATGAAAAATGAAACAGAGGGAAAGATGATGAATGAGGTATCAACATTAAATCCATGCAACAGGCCT
GACCGGGGAATGTCGGCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: Integral Membrane Protein; Type IV Pilus Biogenesis Protein; PilR Type IV Pilus Biosynthesis Protein; Type IV Pilus Biogenesis Protein PilR; Type IV Pilus Integral Membrane Protein; Type IV Secretion System Protein PilR; Type II Secretion System; Type IV Pilus Integral Inner Membrane Protein; Integral Membrane Protein PilR; Type II Secretion System F Domain Protein; Component Of Type II Secretion Apparatus; Type IV Pilus Transmembrane Protein PilR; Type II Secretory Pathway Component PulF; Type IV B Pilus Protein; Transmembrane Protein; Conjugal Transfer Protein; Type IV Pilus Protein; Type II Secretion System Protein F; Type IV Pilus Biosynthesis Protein; PilR Protein; PilR-Like Integral Membrane Protein; General Protein Secretion Protein BfpE

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MSPLYRLRRALARRFFTSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFGFLVDDCRAALTDNSGDNSLE
HALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCRRRIRQAIMRMAVYPLGCIAMLGGTLGVIQTQLIPTLAGMSDP
QTWTGVLGSLNGLLIFFTEHGVVMGAGLALLVAWTRWSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAG
VRTLTALQVIHRFASPWLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVSGDGAAQMIARFGQEWLEETVK
RVNRRGIAVMLFSMVMLFALIGVVVVAVIEATSMTESMGQY

Sequences:

>Translated_361_residues
MSPLYRLRRALARRFFTSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFGFLVDDCRAALTDNSGDNSLE
HALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCRRRIRQAIMRMAVYPLGCIAMLGGTLGVIQTQLIPTLAGMSDP
QTWTGVLGSLNGLLIFFTEHGVVMGAGLALLVAWTRWSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAG
VRTLTALQVIHRFASPWLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVSGDGAAQMIARFGQEWLEETVK
RVNRRGIAVMLFSMVMLFALIGVVVVAVIEATSMTESMGQY
>Mature_360_residues
SPLYRLRRALARRFFTSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFGFLVDDCRAALTDNSGDNSLEH
ALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCRRRIRQAIMRMAVYPLGCIAMLGGTLGVIQTQLIPTLAGMSDPQ
TWTGVLGSLNGLLIFFTEHGVVMGAGLALLVAWTRWSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAGV
RTLTALQVIHRFASPWLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVSGDGAAQMIARFGQEWLEETVKR
VNRRGIAVMLFSMVMLFALIGVVVVAVIEATSMTESMGQY

Specific function: Unknown

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40072; Mature: 39940

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPLYRLRRALARRFFTSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFG
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC
FLVDDCRAALTDNSGDNSLEHALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCRRR
HHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IRQAIMRMAVYPLGCIAMLGGTLGVIQTQLIPTLAGMSDPQTWTGVLGSLNGLLIFFTEH
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECC
GVVMGAGLALLVAWTRWSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAG
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHH
VRTLTALQVIHRFASPWLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVSG
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
DGAAQMIARFGQEWLEETVKRVNRRGIAVMLFSMVMLFALIGVVVVAVIEATSMTESMGQ
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Y
C
>Mature Secondary Structure 
SPLYRLRRALARRFFTSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFG
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC
FLVDDCRAALTDNSGDNSLEHALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCRRR
HHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IRQAIMRMAVYPLGCIAMLGGTLGVIQTQLIPTLAGMSDPQTWTGVLGSLNGLLIFFTEH
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECC
GVVMGAGLALLVAWTRWSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAG
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHH
VRTLTALQVIHRFASPWLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVSG
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
DGAAQMIARFGQEWLEETVKRVNRRGIAVMLFSMVMLFALIGVVVVAVIEATSMTESMGQ
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA