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The map label for this gene is dmsD [H]

Identifier: 29144475

GI number: 29144475

Start: 4385462

End: 4386148

Strand: Direct

Name: dmsD [H]

Synonym: t4215

Alternate gene names: 29144475

Gene position: 4385462-4386148 (Clockwise)

Preceding gene: 29144474

Following gene: 29144477

Centisome position: 91.52

GC content: 53.13

Gene sequence:

>687_bases
GTGGACGCTGCCAATGTAGTTTTTGCCCGGCTTGTGCCATGTAAGCCTGATAAGCGTAGCGTCATCAGGCGAAATATTTC
AGGAGCTATTGCTATGCCTTCCCGTGCTGTTTTGCCGCGTATCCTCGGCGCACTGTTTTACTACTCCCCTGAGAGGCCGG
AGGTGAAAGCGTTGTTCGATTGTTTGCCAACGTTGCCTGAGCTTTACCCCTGGCGCGATCGCGGACATATTGAATCACTG
TGCGCGTCATGGTCGCTACCGGATGATGATGCGCTTACATGGCAATTTTCCGTATTGTTTGAAGGCCAGGGAAAGATGCC
CGTCCCGCCCTGGGGATCGGTCTATCTGGAAAAAGATAATTTGCTGATGGGGGAAACCACCGCCGATTATCGAGCTTTTT
TACAGTCGCAGGGAATGGTATTCACTGACCGTGAACGCGAGCCGGAAGATCAGTTTGGCCTGATGCTATTAGCCTGTAGC
GATCTGCTGGCGCAAGGCGACAACGTGGCGGCCAACCGGTTACTGGAGGCGCATCTGCTACCCTGGGGATTCCGCTATCT
GGAATTGCTGCAACGCAATACCGTTAGCGCCTTCTATGCCCGGCTTGCCATCGTAGCGACCTGTTATCTGCAGGATGTTC
AGCAGCAACAGGGGCTACAACCTGAGAAGAAACGGTTGTTTTTCTAA

Upstream 100 bases:

>100_bases
TGGTCTGCGCGCGCCTGAAATCGAGTGCTACGGTGCTGGCCATGACGGCTGTGGTGGTTATCGCGGCGGAGTTGGCGGGT
AGGATTGCGTTTTACAATCT

Downstream 100 bases:

>100_bases
GGTATTGGTCAGGTTTTGACGACGTGCCGTAATGCTTGTGTCGCCATCGTGCCCGCTGTTGCGTCAGCGGGCACAGTTTA
CTATTACAGCTCCGGCGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MDAANVVFARLVPCKPDKRSVIRRNISGAIAMPSRAVLPRILGALFYYSPERPEVKALFDCLPTLPELYPWRDRGHIESL
CASWSLPDDDALTWQFSVLFEGQGKMPVPPWGSVYLEKDNLLMGETTADYRAFLQSQGMVFTDREREPEDQFGLMLLACS
DLLAQGDNVAANRLLEAHLLPWGFRYLELLQRNTVSAFYARLAIVATCYLQDVQQQQGLQPEKKRLFF

Sequences:

>Translated_228_residues
MDAANVVFARLVPCKPDKRSVIRRNISGAIAMPSRAVLPRILGALFYYSPERPEVKALFDCLPTLPELYPWRDRGHIESL
CASWSLPDDDALTWQFSVLFEGQGKMPVPPWGSVYLEKDNLLMGETTADYRAFLQSQGMVFTDREREPEDQFGLMLLACS
DLLAQGDNVAANRLLEAHLLPWGFRYLELLQRNTVSAFYARLAIVATCYLQDVQQQQGLQPEKKRLFF
>Mature_228_residues
MDAANVVFARLVPCKPDKRSVIRRNISGAIAMPSRAVLPRILGALFYYSPERPEVKALFDCLPTLPELYPWRDRGHIESL
CASWSLPDDDALTWQFSVLFEGQGKMPVPPWGSVYLEKDNLLMGETTADYRAFLQSQGMVFTDREREPEDQFGLMLLACS
DLLAQGDNVAANRLLEAHLLPWGFRYLELLQRNTVSAFYARLAIVATCYLQDVQQQQGLQPEKKRLFF

Specific function: Binds to the twin-arginine signal peptide of dmsA and torA. Could be required for the biogenesis of DMSO reductase rather than for the targeting of dmsA to the inner membrane [H]

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Cytoplasm (By similarity). Note=Mainly cytoplasmic under aerobic conditions, and found in the inner membrane under anaerobic conditions (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=200, Percent_Identity=33, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787272, Length=187, Percent_Identity=28.3422459893048, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 25962; Mature: 25962

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAANVVFARLVPCKPDKRSVIRRNISGAIAMPSRAVLPRILGALFYYSPERPEVKALFD
CCCHHHHHHHHCCCCCCHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHH
CLPTLPELYPWRDRGHIESLCASWSLPDDDALTWQFSVLFEGQGKMPVPPWGSVYLEKDN
HHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCC
LLMGETTADYRAFLQSQGMVFTDREREPEDQFGLMLLACSDLLAQGDNVAANRLLEAHLL
EEECCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
PWGFRYLELLQRNTVSAFYARLAIVATCYLQDVQQQQGLQPEKKRLFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC
>Mature Secondary Structure
MDAANVVFARLVPCKPDKRSVIRRNISGAIAMPSRAVLPRILGALFYYSPERPEVKALFD
CCCHHHHHHHHCCCCCCHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHH
CLPTLPELYPWRDRGHIESLCASWSLPDDDALTWQFSVLFEGQGKMPVPPWGSVYLEKDN
HHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCC
LLMGETTADYRAFLQSQGMVFTDREREPEDQFGLMLLACSDLLAQGDNVAANRLLEAHLL
EEECCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
PWGFRYLELLQRNTVSAFYARLAIVATCYLQDVQQQQGLQPEKKRLFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]