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The map label for this gene is nrfC [H]

Identifier: 29144447

GI number: 29144447

Start: 4347983

End: 4348654

Strand: Direct

Name: nrfC [H]

Synonym: t4185

Alternate gene names: 29144447

Gene position: 4347983-4348654 (Clockwise)

Preceding gene: 29144446

Following gene: 29144448

Centisome position: 90.73

GC content: 56.99

Gene sequence:

>672_bases
ATGAGTTGCACCCGACGTCAATTTATTACCCGCGTCGGCGCGCTGGCGGCGGTCAGTGGGATGGCAGGACGCGTTGTAGC
GAACACGTTGAATATTAACGGCGTGCGTTATGGCATGGTACACGATGAGTCATTATGCATCGGCTGCACGGCCTGCATGG
ATGCCTGTCGGGAAGTCAACAACGTGCCGGAAGGCGTATCGCGCCTGACGATTATTCGCAGCGAGCCGCAGGGGACGTTT
CCTGATGTGAAATATCGCTTCTTCCGCCACTCGTGCCAGCATTGCGACCATGCCCCCTGCGTTGACGTCTGCCCGACCGG
CGCATCATTCCGCGATGCCGCCAGTGGTATTGTCGACGTGAACCCGGACCTTTGCGTCGGCTGTCAGTACTGCATTGCCG
CGTGTCCCTACCGCGTGCGCTTTATCCATCCGGTCAGTAAGACGGCGGATAAGTGCGATTTCTGCCGGAAAACTAACCTG
AAAGCGGGCAAACAGCCCGCCTGCGTTGAGTCATGTCTAACGAAGGCGCTGACGTTTGGTAATCTGGACGATCCCAACAG
CGATATCTCCCGTTTGTTGCGGCAGAAAACCACCTATCGTTACAAGCTGGCGCTGGGCACAAAACCGAAGGTCTACCGCG
TTCCCTTTAACTATGGGGAGGTGAGCCAATGA

Upstream 100 bases:

>100_bases
ACGAGAAAGGGCGGATCAAAATATGCGTGGATTGCCACAGCGATCAGCGTACTAACCCGCACTTTAACCCGGCGTCCGTT
CCGTTGCTTAAGGAGCAGCC

Downstream 100 bases:

>100_bases
CATCCGCTTCTGCATTTCATTTTGCATCACTGGTGTGGGACTGGCCCATCGCCATCTATCTGTTCCTGATTGGCATCTCC
GCCGGACTGGTTACGTTGGC

Product: cytochrome c-type biogenesis protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSCTRRQFITRVGALAAVSGMAGRVVANTLNINGVRYGMVHDESLCIGCTACMDACREVNNVPEGVSRLTIIRSEPQGTF
PDVKYRFFRHSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNL
KAGKQPACVESCLTKALTFGNLDDPNSDISRLLRQKTTYRYKLALGTKPKVYRVPFNYGEVSQ

Sequences:

>Translated_223_residues
MSCTRRQFITRVGALAAVSGMAGRVVANTLNINGVRYGMVHDESLCIGCTACMDACREVNNVPEGVSRLTIIRSEPQGTF
PDVKYRFFRHSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNL
KAGKQPACVESCLTKALTFGNLDDPNSDISRLLRQKTTYRYKLALGTKPKVYRVPFNYGEVSQ
>Mature_222_residues
SCTRRQFITRVGALAAVSGMAGRVVANTLNINGVRYGMVHDESLCIGCTACMDACREVNNVPEGVSRLTIIRSEPQGTFP
DVKYRFFRHSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNLK
AGKQPACVESCLTKALTFGNLDDPNSDISRLLRQKTTYRYKLALGTKPKVYRVPFNYGEVSQ

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=223, Percent_Identity=90.5829596412556, Blast_Score=421, Evalue=1e-119,
Organism=Escherichia coli, GI226510944, Length=213, Percent_Identity=48.8262910798122, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1789370, Length=259, Percent_Identity=31.2741312741313, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787872, Length=169, Percent_Identity=35.5029585798817, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787122, Length=157, Percent_Identity=35.031847133758, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787749, Length=154, Percent_Identity=31.1688311688312, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790326, Length=178, Percent_Identity=29.2134831460674, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787740, Length=111, Percent_Identity=30.6306306306306, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1788811, Length=161, Percent_Identity=33.5403726708075, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082180, Length=172, Percent_Identity=32.5581395348837, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789079, Length=204, Percent_Identity=27.4509803921569, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787478, Length=103, Percent_Identity=32.0388349514563, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789067, Length=159, Percent_Identity=32.0754716981132, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082179, Length=92, Percent_Identity=38.0434782608696, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI2367245, Length=158, Percent_Identity=31.6455696202532, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24562; Mature: 24430

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
7.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCTRRQFITRVGALAAVSGMAGRVVANTLNINGVRYGMVHDESLCIGCTACMDACREVN
CCCHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHC
NVPEGVSRLTIIRSEPQGTFPDVKYRFFRHSCQHCDHAPCVDVCPTGASFRDAASGIVDV
CCHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCEEEC
NPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNLKAGKQPACVESCLTKALTFG
CCCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
NLDDPNSDISRLLRQKTTYRYKLALGTKPKVYRVPFNYGEVSQ
CCCCCCHHHHHHHHHHCCEEEEEEECCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
SCTRRQFITRVGALAAVSGMAGRVVANTLNINGVRYGMVHDESLCIGCTACMDACREVN
CCHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHC
NVPEGVSRLTIIRSEPQGTFPDVKYRFFRHSCQHCDHAPCVDVCPTGASFRDAASGIVDV
CCHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCEEEC
NPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNLKAGKQPACVESCLTKALTFG
CCCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
NLDDPNSDISRLLRQKTTYRYKLALGTKPKVYRVPFNYGEVSQ
CCCCCCHHHHHHHHHHCCEEEEEEECCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]