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The map label for this gene is yjcC [H]

Identifier: 29144432

GI number: 29144432

Start: 4332156

End: 4333757

Strand: Direct

Name: yjcC [H]

Synonym: t4170

Alternate gene names: 29144432

Gene position: 4332156-4333757 (Clockwise)

Preceding gene: 29144430

Following gene: 29144434

Centisome position: 90.4

GC content: 47.5

Gene sequence:

>1602_bases
ATGAGTCAAAGCACACGACGCAAGGTGTTGAGATTTCTCGGAACGATCATTGTGGTATTACTTCCTGTATTGCTGGCGAT
CTGGTTTGCTCATATCCGGGCAGTCTCTGAAACCAGAAATCAGTTACATTCATTTGCGCAGTTGGTATTAGATAAAACGG
AGCGGGTTATCCTGCAAGCAGATTTAGCCCGCGATGCCGCTGAACAATATCAGGGGCAAGCCTGTACGCCAGCCCATCAA
CAGCGAATGCTGAATATTATCCGCGGTCGTTTGTACATTAATGAGTTGATTTATGCTAAGGGCCAGCGTTTTCTATGCTC
TACGGTTATGACGCCAACAAGTCCTTATTTTATTCCCCGCGCTGACTATAAACGAAAGCCTGACATCGCTATTTATTACT
ATCGTGATACGCCTTTTTTCAACGGTTATAAAATGACATATATGCAGCGGGGAAACTATGTCGCGGTTATCAATCCCTTA
TCTTATAGCGAGGTGATGTCAGACGATCCGGCGTTGGCCTGGGGAATGTATGATACGGTGACCAACACCTTTTTCTCCCT
GAGTGAACAGGCGCAGGCTGATCAGCTATTACCTTTGGTACAACGGAGTGAACCTGTGTTCCAACAGGGTGAGCGTTTCT
ATGCTCTGGTTAAATCAGCAAAACGACCGGTTGCCGCGATTGTTTCAACCTCAAAGCAACGCTTTTACCAGAACCTCTTT
CATCAGCTTACGTTAACGCTACCGTTAGGGATCATCTGTAGCATTATCGTCTTATTTATGTGGTCACGATCCCGGCAGGC
ATATTACTCACCGCGTCGATTGCTGCAACGGGCCATTACCAGGCACCAGCTTTGCCTTCATTATCAGCCGATCATTGATA
TCCGAAACGGGACATGTGTAGGTGCCGAAGCGCTATTGCGTTGGCCGGGTTATCACGGTCCGGTGATGAGCCCGTGCGAA
TTTATTCCTCTGGCGGAAAAAGAGGGGATGATTGAGCAGATCACCGATTATGTCGTCGAAGAGGTATTTAATGATTTAGG
TGGTTTTCTGGCCGCGCACCCGCATCTTTATGTCTCTATCAATCTCTCTGCCGCCGATTTTCTCTCTTCCCGACTAATTG
TGATGATTCATGAAAAAACGCGTCAGCATTCAGTGCTTGCGCAACAGATAAAGGTTGAAGTGACCGAGCGCGGATTTATT
GATGTGCCGAAAATGACGCCGATTATTCAGGCGTTTCGCCAGGCGGGATACGAGGTAGCAATTGATGACTTTGGTACCGG
CTATTCGAACTTGCATAACCTGTACTCATTAAATGTCGACCTTTTAAAAATTGATAAATCTTTTGTCGATACGCTAACCA
CTAATAGCGCCAGCCATTTGATTGTGGAACATATTATTGAAATGGCGCAAAGTTTGCGGCTAAAAATCATTGCTGAGGGG
GTTGAAACGGCTGAACAGGTTAGCTGGTTGCTAAAACGCGGCGTGCAGTATTGTCAGGGATGGCACTTTGCGAAGGCGTT
ACCGCCGCAGGAATTCATCGTCTGGCTACAACAAACGCCCGCGCCTCTGACGATACGCGGGCAGACGCCCTACAGGCGGT
GA

Upstream 100 bases:

>100_bases
GTTGCTAATATTGATAAATTCATGCACCGTAAACCTCCGTTTGGTTCACGTCTTATTTTGCCAATAATAGTCACAAATAA
TGCAGGGAAATAGGCTGAAA

Downstream 100 bases:

>100_bases
CGGTAATCGCTGGGAGTGCGATCGAACTCGCGGCGGAATACACGCGAGAAGGTTTGCTGCGATACATAGCCCAGGTCCAT
CGCGATATCAAAAATCGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 532

Protein sequence:

>533_residues
MSQSTRRKVLRFLGTIIVVLLPVLLAIWFAHIRAVSETRNQLHSFAQLVLDKTERVILQADLARDAAEQYQGQACTPAHQ
QRMLNIIRGRLYINELIYAKGQRFLCSTVMTPTSPYFIPRADYKRKPDIAIYYYRDTPFFNGYKMTYMQRGNYVAVINPL
SYSEVMSDDPALAWGMYDTVTNTFFSLSEQAQADQLLPLVQRSEPVFQQGERFYALVKSAKRPVAAIVSTSKQRFYQNLF
HQLTLTLPLGIICSIIVLFMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSPCE
FIPLAEKEGMIEQITDYVVEEVFNDLGGFLAAHPHLYVSINLSAADFLSSRLIVMIHEKTRQHSVLAQQIKVEVTERGFI
DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEG
VETAEQVSWLLKRGVQYCQGWHFAKALPPQEFIVWLQQTPAPLTIRGQTPYRR

Sequences:

>Translated_533_residues
MSQSTRRKVLRFLGTIIVVLLPVLLAIWFAHIRAVSETRNQLHSFAQLVLDKTERVILQADLARDAAEQYQGQACTPAHQ
QRMLNIIRGRLYINELIYAKGQRFLCSTVMTPTSPYFIPRADYKRKPDIAIYYYRDTPFFNGYKMTYMQRGNYVAVINPL
SYSEVMSDDPALAWGMYDTVTNTFFSLSEQAQADQLLPLVQRSEPVFQQGERFYALVKSAKRPVAAIVSTSKQRFYQNLF
HQLTLTLPLGIICSIIVLFMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSPCE
FIPLAEKEGMIEQITDYVVEEVFNDLGGFLAAHPHLYVSINLSAADFLSSRLIVMIHEKTRQHSVLAQQIKVEVTERGFI
DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEG
VETAEQVSWLLKRGVQYCQGWHFAKALPPQEFIVWLQQTPAPLTIRGQTPYRR
>Mature_532_residues
SQSTRRKVLRFLGTIIVVLLPVLLAIWFAHIRAVSETRNQLHSFAQLVLDKTERVILQADLARDAAEQYQGQACTPAHQQ
RMLNIIRGRLYINELIYAKGQRFLCSTVMTPTSPYFIPRADYKRKPDIAIYYYRDTPFFNGYKMTYMQRGNYVAVINPLS
YSEVMSDDPALAWGMYDTVTNTFFSLSEQAQADQLLPLVQRSEPVFQQGERFYALVKSAKRPVAAIVSTSKQRFYQNLFH
QLTLTLPLGIICSIIVLFMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSPCEF
IPLAEKEGMIEQITDYVVEEVFNDLGGFLAAHPHLYVSINLSAADFLSSRLIVMIHEKTRQHSVLAQQIKVEVTERGFID
VPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGV
ETAEQVSWLLKRGVQYCQGWHFAKALPPQEFIVWLQQTPAPLTIRGQTPYRR

Specific function: Overexpression reduces biofilm formation [H]

COG id: COG4943

COG function: function code T; Predicted signal transduction protein containing sensor and EAL domains

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=528, Percent_Identity=65.3409090909091, Blast_Score=710, Evalue=0.0,
Organism=Escherichia coli, GI87081743, Length=519, Percent_Identity=33.5260115606936, Blast_Score=302, Evalue=4e-83,
Organism=Escherichia coli, GI87081845, Length=264, Percent_Identity=32.5757575757576, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI87081921, Length=254, Percent_Identity=38.9763779527559, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=32.0158102766798, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1787541, Length=245, Percent_Identity=33.469387755102, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=33.3333333333333, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI226510982, Length=239, Percent_Identity=36.8200836820084, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=32.7731092436975, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI1788849, Length=235, Percent_Identity=32.7659574468085, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87082096, Length=239, Percent_Identity=31.3807531380753, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1787055, Length=247, Percent_Identity=29.5546558704453, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1787410, Length=151, Percent_Identity=29.8013245033113, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 61063; Mature: 60931

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSTRRKVLRFLGTIIVVLLPVLLAIWFAHIRAVSETRNQLHSFAQLVLDKTERVILQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLARDAAEQYQGQACTPAHQQRMLNIIRGRLYINELIYAKGQRFLCSTVMTPTSPYFIPR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEECC
ADYKRKPDIAIYYYRDTPFFNGYKMTYMQRGNYVAVINPLSYSEVMSDDPALAWGMYDTV
CCCCCCCCEEEEEEECCCCCCCEEEEEEECCCEEEEECCCCHHHHHCCCCCEEHHHHHHH
TNTFFSLSEQAQADQLLPLVQRSEPVFQQGERFYALVKSAKRPVAAIVSTSKQRFYQNLF
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
HQLTLTLPLGIICSIIVLFMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEECCCCCEE
GAEALLRWPGYHGPVMSPCEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAAHPHLYVSI
CHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
NLSAADFLSSRLIVMIHEKTRQHSVLAQQIKVEVTERGFIDVPKMTPIIQAFRQAGYEVA
ECCHHHHHHCCEEEEEECHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHCCCEEE
IDDFGTGYSNLHNLYSLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEG
ECCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VETAEQVSWLLKRGVQYCQGWHFAKALPPQEFIVWLQQTPAPLTIRGQTPYRR
HHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
SQSTRRKVLRFLGTIIVVLLPVLLAIWFAHIRAVSETRNQLHSFAQLVLDKTERVILQA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLARDAAEQYQGQACTPAHQQRMLNIIRGRLYINELIYAKGQRFLCSTVMTPTSPYFIPR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEECC
ADYKRKPDIAIYYYRDTPFFNGYKMTYMQRGNYVAVINPLSYSEVMSDDPALAWGMYDTV
CCCCCCCCEEEEEEECCCCCCCEEEEEEECCCEEEEECCCCHHHHHCCCCCEEHHHHHHH
TNTFFSLSEQAQADQLLPLVQRSEPVFQQGERFYALVKSAKRPVAAIVSTSKQRFYQNLF
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
HQLTLTLPLGIICSIIVLFMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEECCCCCEE
GAEALLRWPGYHGPVMSPCEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAAHPHLYVSI
CHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
NLSAADFLSSRLIVMIHEKTRQHSVLAQQIKVEVTERGFIDVPKMTPIIQAFRQAGYEVA
ECCHHHHHHCCEEEEEECHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHCCCEEE
IDDFGTGYSNLHNLYSLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEG
ECCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VETAEQVSWLLKRGVQYCQGWHFAKALPPQEFIVWLQQTPAPLTIRGQTPYRR
HHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]