Click here to switch to the map view.

The map label for this gene is yjbF [H]

Identifier: 29144391

GI number: 29144391

Start: 4272335

End: 4272973

Strand: Direct

Name: yjbF [H]

Synonym: t4129

Alternate gene names: 29144391

Gene position: 4272335-4272973 (Clockwise)

Preceding gene: 29144390

Following gene: 29144392

Centisome position: 89.16

GC content: 56.03

Gene sequence:

>639_bases
GTGAAGCGACTCGCACTTATCCTGATTTGCCTGCTATTACAGGCGTGTTCGGCCACCACCAAAGGCCTGGGCGATTCACT
GTGGGACAGTTTGTTCGGTACGCCAGGCGTACAGCTAACGGATGACGATATTCAAAACATGCCTTATGCCAGCCAGTACA
TGCAGCTTAACGGCGGTCCTCAACTGTTTGTGGTGCTCGCTTTCTCGGAAAACGGGCAGCAGAAATGGGTGACGCAGGAT
GGCGCGACGATCGTGACGCAGCATGGCCGTCTGGTCAAAACGCTGCTCGGCGGCGACAACCTGATCGATGTGAATAATCT
GGCGACCGACCCGCTGGCGAAACCAGGACAGATTATCGATGGCGCGACCTGGACTCGCACCCTGGGCTGGACCGAACATC
GCCAGGTGCGTTACGCCACCGCCCGTTCCGTTTTTACATGGCGAGGGACCGATAGAGTGAACGTCGGCAGTGAGGAAACC
GCCGTGCGGGTGTTAGATGAAGAAGTGACGACCGATCAAACGCGCTGGCGTAATCGCTACTGGGTTGATAGCGAAGGCCA
AATTCGCCAGACGGAACAGTATCTGGGCGCGAATTACTTTCCGGTGAAAACCACGCTGATTAAGGCGGCAAAATCATGA

Upstream 100 bases:

>100_bases
CGGAACCACGACCACCACGACCACCAGTACCCAGTAGTATCGGTACGTTTAACCATAACCACACTCCGGTGTGGTTATTT
TGCCCCTCTGGAGAAGCGTC

Downstream 100 bases:

>100_bases
TGAAAAGGACGATAAGCGCGCTGGCGCTGGCCTTTGTCGCGTCATCCGCCTTTGCCAGCGGCACTGTTACCGTTTTTACC
CAGGGTAATAGCGAGCCTAA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKRLALILICLLLQACSATTKGLGDSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFSENGQQKWVTQD
GATIVTQHGRLVKTLLGGDNLIDVNNLATDPLAKPGQIIDGATWTRTLGWTEHRQVRYATARSVFTWRGTDRVNVGSEET
AVRVLDEEVTTDQTRWRNRYWVDSEGQIRQTEQYLGANYFPVKTTLIKAAKS

Sequences:

>Translated_212_residues
MKRLALILICLLLQACSATTKGLGDSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFSENGQQKWVTQD
GATIVTQHGRLVKTLLGGDNLIDVNNLATDPLAKPGQIIDGATWTRTLGWTEHRQVRYATARSVFTWRGTDRVNVGSEET
AVRVLDEEVTTDQTRWRNRYWVDSEGQIRQTEQYLGANYFPVKTTLIKAAKS
>Mature_212_residues
MKRLALILICLLLQACSATTKGLGDSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFSENGQQKWVTQD
GATIVTQHGRLVKTLLGGDNLIDVNNLATDPLAKPGQIIDGATWTRTLGWTEHRQVRYATARSVFTWRGTDRVNVGSEET
AVRVLDEEVTTDQTRWRNRYWVDSEGQIRQTEQYLGANYFPVKTTLIKAAKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ymcC [H]

Homologues:

Organism=Escherichia coli, GI87082360, Length=211, Percent_Identity=86.7298578199052, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI1787221, Length=213, Percent_Identity=38.9671361502347, Blast_Score=165, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021308 [H]

Pfam domain/function: PF11102 DUF2886 [H]

EC number: NA

Molecular weight: Translated: 23680; Mature: 23680

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLALILICLLLQACSATTKGLGDSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGP
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCCHHHCCCCHHHHEEECCCC
QLFVVLAFSENGQQKWVTQDGATIVTQHGRLVKTLLGGDNLIDVNNLATDPLAKPGQIID
EEEEEEEECCCCCEEEEECCCCEEEECCCCEEHHHHCCCCEEECCCCCCCCCCCCCCEEC
GATWTRTLGWTEHRQVRYATARSVFTWRGTDRVNVGSEETAVRVLDEEVTTDQTRWRNRY
CCCEEEECCCCCHHHEEEEHHCEEEEECCCCCCCCCCCHHHHEEHHHHHCCCHHHHCCCE
WVDSEGQIRQTEQYLGANYFPVKTTLIKAAKS
EECCCCCHHHHHHHHCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MKRLALILICLLLQACSATTKGLGDSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGP
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCCHHHCCCCHHHHEEECCCC
QLFVVLAFSENGQQKWVTQDGATIVTQHGRLVKTLLGGDNLIDVNNLATDPLAKPGQIID
EEEEEEEECCCCCEEEEECCCCEEEECCCCEEHHHHCCCCEEECCCCCCCCCCCCCCEEC
GATWTRTLGWTEHRQVRYATARSVFTWRGTDRVNVGSEETAVRVLDEEVTTDQTRWRNRY
CCCEEEECCCCCHHHEEEEHHCEEEEECCCCCCCCCCCHHHHEEHHHHHCCCHHHHCCCE
WVDSEGQIRQTEQYLGANYFPVKTTLIKAAKS
EECCCCCHHHHHHHHCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]