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The map label for this gene is yhjB [H]

Identifier: 29144183

GI number: 29144183

Start: 4047994

End: 4048596

Strand: Direct

Name: yhjB [H]

Synonym: t3911

Alternate gene names: 29144183

Gene position: 4047994-4048596 (Clockwise)

Preceding gene: 29144179

Following gene: 29144185

Centisome position: 84.47

GC content: 47.76

Gene sequence:

>603_bases
ATGCAGGTAATCATGTTTGACAGGCAGTCAATATTTATTCATGGAATGAAAATCAGTTTGCAGCAGCACATTCCAGGAAT
AAGTATCCAGAGTGTCGGTCAGGCAGAAGAACTCTGGCAAAAAATAGAAAGCGCGCCGGATGCGCTGGTCATGCTGGATA
GCGGCCTGGATGCTGAATTTTGCCGCGAGGTGTTACAAAGAACCGCGCAGCAATTTCCGGAGGTGAAGATTATTATCACG
GCGATGGATGGCAGTCAAAAGTGGCTGCATGAAGTCATGCAATTTAACGTTCAGGTCGTGGTGCCACGCGATTCTGATGC
CGAAACCTTTGTCCTTGCGCTCAATACTGTCGCTCGCGGGATGATGTTTTTACCGGGGGATTGGTTAAATTCAACGGAGC
TGGAGTCCCATGATATAAAAGCGTTAAGCGCCCGCCAGCGGGAAATTTTACAGATGCTTGCCGCAGGAGAATCAAATAAA
CAAATTGGGCGGGCGTTAAATATTAGTACCGGGACGGTTAAAGCGCATCTGGAGTCGCTTTACCGGCGGCTGGATGTAAA
AAATCGTACCCAGGCCGCCATGATGTTAAATGAATCGAATTAA

Upstream 100 bases:

>100_bases
GGTAAAATGGCCTATACCAAATGGCGACTTCTTATTTTACCCTACGGGTAATACCCTTCCTCATCTTGAGACTATTATCT
TACCCAGGTGGAGAAAAGTA

Downstream 100 bases:

>100_bases
CGACGTTAAATTCGCAGTCCGCTTATTTCTGGCTGTGAAATATCATCCGTATTGATTAATGATAAAAAACGCTGATGTCC
GATGCTGAACATCAGCGCAA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MQVIMFDRQSIFIHGMKISLQQHIPGISIQSVGQAEELWQKIESAPDALVMLDSGLDAEFCREVLQRTAQQFPEVKIIIT
AMDGSQKWLHEVMQFNVQVVVPRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNK
QIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNESN

Sequences:

>Translated_200_residues
MQVIMFDRQSIFIHGMKISLQQHIPGISIQSVGQAEELWQKIESAPDALVMLDSGLDAEFCREVLQRTAQQFPEVKIIIT
AMDGSQKWLHEVMQFNVQVVVPRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNK
QIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNESN
>Mature_200_residues
MQVIMFDRQSIFIHGMKISLQQHIPGISIQSVGQAEELWQKIESAPDALVMLDSGLDAEFCREVLQRTAQQFPEVKIIIT
AMDGSQKWLHEVMQFNVQVVVPRDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNK
QIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNESN

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789937, Length=200, Percent_Identity=72, Blast_Score=305, Evalue=1e-84,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 22523; Mature: 22523

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVIMFDRQSIFIHGMKISLQQHIPGISIQSVGQAEELWQKIESAPDALVMLDSGLDAEF
CEEEEEECCEEEEEEEEEEHHHCCCCCCHHCCCCHHHHHHHHHCCCCEEEEEECCCCHHH
CREVLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNVQVVVPRDSDAETFVLALNTVARG
HHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCEEEEEECCCCCCEEEEEHHHHHCC
MMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESL
CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCEECCCCCHHHHHHHHH
YRRLDVKNRTQAAMMLNESN
HHHHCCCCCHHEEEEEECCC
>Mature Secondary Structure
MQVIMFDRQSIFIHGMKISLQQHIPGISIQSVGQAEELWQKIESAPDALVMLDSGLDAEF
CEEEEEECCEEEEEEEEEEHHHCCCCCCHHCCCCHHHHHHHHHCCCCEEEEEECCCCHHH
CREVLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNVQVVVPRDSDAETFVLALNTVARG
HHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCEEEEEECCCCCCEEEEEHHHHHCC
MMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESL
CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCEECCCCCHHHHHHHHH
YRRLDVKNRTQAAMMLNESN
HHHHCCCCCHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]