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The map label for this gene is xylA [H]

Identifier: 29144136

GI number: 29144136

Start: 3985803

End: 3987125

Strand: Direct

Name: xylA [H]

Synonym: t3858

Alternate gene names: 29144136

Gene position: 3985803-3987125 (Clockwise)

Preceding gene: 29144134

Following gene: 29144137

Centisome position: 83.18

GC content: 53.51

Gene sequence:

>1323_bases
ATGCAGGCTTATTTTGACCAACTCGATCGTGTTCGCTATGAAGGCCCTCAATCGACTAACCCGCTGGCATTTCGTCATTA
CAATCCCGACGAGCTGGTTTTAGGTAAACGTATGGAAGATCACCTGCGTTTCGCGGCCTGTTACTGGCATACCTTCTGCT
GGAACGGCGCGGATATGTTTGGCGTAGGCGCGTTTAATCGTCCGTGGCAGCAACCGGGCGAAGCGCTGGAGCTGGCGAAA
CGCAAAGCGGACGTGGCGTTTGAATTTTTCCACAAACTGAATGTGCCTTTTTACTGCTTCCATGACGTGGATGTGTCGCC
GAAAGGCGCGTCGTTGAAAGAATATAAAAACAACTTCGCGCAGATGGTGGATGTGCTGGCGGCGAAACAGGAGCAGAGCG
GCGTAAAACTGCTGTGGGGAACGGCGAACTGCTTTACCAACCCGCGCTATGGCGCAGGCGCCGCCACTAACCCGGACCCG
GAAGTCTTTAGCTGTGCAGCGACGCAAGTGGTTACGGCAATGAACGCCACGCATAAACTGGGCGGCGAAAATTACGTACT
GTGGGGCGGACGCGAAGGTTATGAAACGTTGCTGAATACCGATCTACGCCAGGAACGCGAACAGATTGGCCGCTTTATGC
AAATGGTGGTTGAGCACAAACATAAAATGGGTTTCCAGGGCACGCTGCTGATTGAACCGAAACCGCAGGAACCGACAAAA
CATCAGTATGATTATGACGTTGCAACGGTCTATGGCTTCCTCAAACAGTTCGGCCTGGAAAAAGAGATCAAAGTGAACAT
TGAGGCGAACCACGCCACGCTGGCGGGCCATTCGTTCCACCATGAAATCGCAACCGCTATCGCGCTGGGTATTTTTGGCT
CCGTTGATGCCAACCGCGGCGATGCGCAACTGGGCTGGGATACCGATCAGTTCCCGATTAGCGTTGAAGAGAACGCGCTG
GTGATGTACGAAATCCTGAAAGCGGGCGGATTCACGACGGGCGGTCTCAACTTCGACGCCAAAGTTCGTCGCCAGAGCAC
CGATAAATACGATCTGTTCTACGGTCATATCGGCGCGATGGATACGATGGCGTTGTCACTGAAAATCGCCGCGCGTATGG
TCGAAGACGGCGAGTTGGATAAACGCGTGGCGAAGCGCTATGCCGGCTGGAATGGCGAGCTGGGGCAGCAGATTCTGAAA
GGACAACTCTCCTTAGGCGAACTGGCGCAGTATGCGGAGCAGCACCATCTGGCGCCGGTACATCAAAGCGGTCATCAGGA
GCTGTTAGAAAATCTGGTTAACCGTTATCTGTTTGATAAATAA

Upstream 100 bases:

>100_bases
TAATAGCGGTGTGAAATAACGTAATTGAGCAATAAATCAGGAAATTCCAGTATGACGTTATGTCGTTTACTTGCCGTCTT
ATCTGATTATGGAGCTCACT

Downstream 100 bases:

>100_bases
CTCTATCTACCGGGCGACTCCGCGTTAGCCCGGCCTGTAGTCGTGATTAGCCCGGTAAGCGTAGCGCTGCCGGGCGCTTT
CAGTAAAGGAACCCACACTA

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGAFNRPWQQPGEALELAK
RKADVAFEFFHKLNVPFYCFHDVDVSPKGASLKEYKNNFAQMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP
EVFSCAATQVVTAMNATHKLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENAL
VMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILK
GQLSLGELAQYAEQHHLAPVHQSGHQELLENLVNRYLFDK

Sequences:

>Translated_440_residues
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGAFNRPWQQPGEALELAK
RKADVAFEFFHKLNVPFYCFHDVDVSPKGASLKEYKNNFAQMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP
EVFSCAATQVVTAMNATHKLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENAL
VMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILK
GQLSLGELAQYAEQHHLAPVHQSGHQELLENLVNRYLFDK
>Mature_440_residues
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGAFNRPWQQPGEALELAK
RKADVAFEFFHKLNVPFYCFHDVDVSPKGASLKEYKNNFAQMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP
EVFSCAATQVVTAMNATHKLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENAL
VMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILK
GQLSLGELAQYAEQHHLAPVHQSGHQELLENLVNRYLFDK

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=440, Percent_Identity=92.2727272727273, Blast_Score=863, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49641; Mature: 49641

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMF
CCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEE
GVGAFNRPWQQPGEALELAKRKADVAFEFFHKLNVPFYCFHDVDVSPKGASLKEYKNNFA
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH
QMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSCAATQVVTAMNATHKL
HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRG
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCC
DAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM
CCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEECCCHH
DTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHHLAPV
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCH
HQSGHQELLENLVNRYLFDK
HCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMF
CCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEE
GVGAFNRPWQQPGEALELAKRKADVAFEFFHKLNVPFYCFHDVDVSPKGASLKEYKNNFA
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH
QMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSCAATQVVTAMNATHKL
HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVEHKHKMGFQGTLLIEPKPQEPTK
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
HQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRG
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCC
DAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM
CCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEECCCHH
DTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHHLAPV
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCH
HQSGHQELLENLVNRYLFDK
HCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA