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The map label for this gene is ysaA [H]

Identifier: 29144131

GI number: 29144131

Start: 3979100

End: 3979573

Strand: Direct

Name: ysaA [H]

Synonym: t3853

Alternate gene names: 29144131

Gene position: 3979100-3979573 (Clockwise)

Preceding gene: 29144130

Following gene: 29144134

Centisome position: 83.04

GC content: 60.97

Gene sequence:

>474_bases
ATGAACCGGTTTATTATGGCGGATGCGTCGGCGTGTATCGGGTGTCGTACCTGCGAGGTCGCCTGCGTGGTGTCGCACCA
GGAACAGCAGAATAGCGCGGCGGTGACGACGGCGGACTTTGTGCCGCGTATCCGGGTGATAAAAGAGGATAGCTTCACCA
CGGCCACGGTCTGCCATCAGTGTGAGGACGCGCCGTGCGCGAATGTCTGCCCGGTACAGGCGATTCGCCGTGATCGGGGG
CATATCTTCGTGACGCCATCGCGCTGCATTGGTTGTAAAAGCTGTATGCTGGCTTGCCCGTTTGGCGCGATGACTGTGGT
GGCGTCCGCGTCAGGCGCGCAGGCGATTAAATGCGATCTTTGCTGGCATCGGGAAGCGGGGCCGGCGTGCGTGGAAGCCT
GCCCGACCAGTGCGTTACAGTGCGTTGACGCAACACACGTGCAGCGCCAGCGCCTCTATTCTCAACCTTTCTGA

Upstream 100 bases:

>100_bases
TTATCAGGCATCTGACAAAATTTGTCCGTTTGCGTAGTGGGATCAAAGCGGCGGGGAATGGCTCTCTGGCATTCTGGCGT
TTTAACGCAGGGGGAGAACA

Downstream 100 bases:

>100_bases
ACATCGTTCCGGCCTGCATAATGGCCGGAATAACCGTCAGCCTTCACGCCAGGCGCGTTCTATCTCTTCTGCCAGAATTT
TTACGCCCGCCTCGATTTTA

Product: electron-transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MNRFIMADASACIGCRTCEVACVVSHQEQQNSAAVTTADFVPRIRVIKEDSFTTATVCHQCEDAPCANVCPVQAIRRDRG
HIFVTPSRCIGCKSCMLACPFGAMTVVASASGAQAIKCDLCWHREAGPACVEACPTSALQCVDATHVQRQRLYSQPF

Sequences:

>Translated_157_residues
MNRFIMADASACIGCRTCEVACVVSHQEQQNSAAVTTADFVPRIRVIKEDSFTTATVCHQCEDAPCANVCPVQAIRRDRG
HIFVTPSRCIGCKSCMLACPFGAMTVVASASGAQAIKCDLCWHREAGPACVEACPTSALQCVDATHVQRQRLYSQPF
>Mature_157_residues
MNRFIMADASACIGCRTCEVACVVSHQEQQNSAAVTTADFVPRIRVIKEDSFTTATVCHQCEDAPCANVCPVQAIRRDRG
HIFVTPSRCIGCKSCMLACPFGAMTVVASASGAQAIKCDLCWHREAGPACVEACPTSALQCVDATHVQRQRLYSQPF

Specific function: Unknown

COG id: COG1142

COG function: function code C; Fe-S-cluster-containing hydrogenase components 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367245, Length=156, Percent_Identity=72.4358974358974, Blast_Score=236, Evalue=6e-64,
Organism=Escherichia coli, GI1789067, Length=162, Percent_Identity=60.4938271604938, Blast_Score=191, Evalue=2e-50,
Organism=Escherichia coli, GI1788811, Length=147, Percent_Identity=51.7006802721088, Blast_Score=144, Evalue=3e-36,
Organism=Escherichia coli, GI87082179, Length=154, Percent_Identity=47.4025974025974, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI87082180, Length=156, Percent_Identity=41.025641025641, Blast_Score=124, Evalue=3e-30,
Organism=Escherichia coli, GI1789079, Length=181, Percent_Identity=39.7790055248619, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI87082114, Length=190, Percent_Identity=35.7894736842105, Blast_Score=105, Evalue=1e-24,
Organism=Escherichia coli, GI1787122, Length=147, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1787872, Length=150, Percent_Identity=34.6666666666667, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI2367345, Length=143, Percent_Identity=36.3636363636364, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI1787963, Length=161, Percent_Identity=30.4347826086957, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI226510944, Length=144, Percent_Identity=34.7222222222222, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 16931; Mature: 16931

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

10.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
13.4 %Cys+Met (Translated Protein)
10.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
13.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFIMADASACIGCRTCEVACVVSHQEQQNSAAVTTADFVPRIRVIKEDSFTTATVCHQ
CCEEEEECCCHHHCCCCEEEEEEECCCCCCCCCEEEEHHHCCEEEEEECCCCCHHHHHHH
CEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAMTVVASASGAQAIKCDL
CCCCCCCCCCHHHHHHCCCCCEEEECHHHHCHHHHHHCCCCCHHEEEECCCCCCEEEEEE
CWHREAGPACVEACPTSALQCVDATHVQRQRLYSQPF
EECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRFIMADASACIGCRTCEVACVVSHQEQQNSAAVTTADFVPRIRVIKEDSFTTATVCHQ
CCEEEEECCCHHHCCCCEEEEEEECCCCCCCCCEEEEHHHCCEEEEEECCCCCHHHHHHH
CEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGAMTVVASASGAQAIKCDL
CCCCCCCCCCHHHHHHCCCCCEEEECHHHHCHHHHHHCCCCCHHEEEECCCCCCEEEEEE
CWHREAGPACVEACPTSALQCVDATHVQRQRLYSQPF
EECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]