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The map label for this gene is yisR [H]

Identifier: 29144120

GI number: 29144120

Start: 3967959

End: 3968771

Strand: Direct

Name: yisR [H]

Synonym: t3841

Alternate gene names: 29144120

Gene position: 3967959-3968771 (Clockwise)

Preceding gene: 29144118

Following gene: 29144130

Centisome position: 82.8

GC content: 54.61

Gene sequence:

>813_bases
ATGCTCGAATTATCCATAACATTACCGATTAAAGTCCAAAACGGCGGATTATTTATTTCTCGCGGCATTGGGCGTCATCC
TGCCAGGCGTCTGCAATCGTGGGAAATTATATTTGTGGAAAAAGGCTGCCTGAAAATTCAGGAAGAATGTGTTTTCTGTG
TCGAAGCCGGGGAAAGCCTGTTGCTTTGGCCGCATCGCCGCCATATTGGCGTTGAGGAGTTTCCCGCCGATCTTAAATTT
TACTGGCTCCATTTTGAGGTCAAAGCGCCGGACAGCGACCCGCGCTGGCTGACGCATCTTTCCGTGCCGCAGCATACCCA
GGTTGCCGATCCGCAGGCGCTGATTGCGCTTTTTCGCCAGTTTATGAACGAGCAGGAAAAGCACCAGCGCAGTCCGGCGC
TGGAGTTCATCGTGCTGCTGATTTTGCAGCAGCTCACCGTTGACGCCCGGCAGAATGAAAACGCCGAGGCCGCTGGCGTG
TCGCTGGCCTGGAAAGCGCAGCAGCTGATTCGAACGCACTATCACCTGCCGCTTTCCAGCGCGGTTCTGGCGAAAGAACT
GCATTGCAATGTGGATTATCTGGGACGCGTTTATCGGCGGGTATTTCACCTTACGCTAACGGAAGCCATCCACCGCCAGC
GGGTGCGCGAGGCGGAAAAGTTGCTGATTAGCGACGCGCGTTCGTTAAAAGAGGTGGCGGAGCGGTGCGGTTTTAATGAC
GTTGGTTACTTTCGCCAGATCTTCCGCAAGCACACCGGCCTGACGCCTACCGCCTGGAAGCGGCGCTACAGTAAGGAACA
CGTTAATTCTTGA

Upstream 100 bases:

>100_bases
TTTAAAAATGTGAGATGGATCGAGTGAAATGACTATTTTTAGTTAATAATCAAAAAGTAATATGAAATACGGTGCTGAAT
GAGCGGGAAATAACATATTA

Downstream 100 bases:

>100_bases
GTATAATCTTTGGCCCTCTGACAACGCGGTTGCAAACTGAATGCCCGATGGCGCTTTGCTTATCGGGCCTACAAGAGTTC
ATCACAACGTATTGATATTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEECVFCVEAGESLLLWPHRRHIGVEEFPADLKF
YWLHFEVKAPDSDPRWLTHLSVPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAGV
SLAWKAQQLIRTHYHLPLSSAVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFND
VGYFRQIFRKHTGLTPTAWKRRYSKEHVNS

Sequences:

>Translated_270_residues
MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEECVFCVEAGESLLLWPHRRHIGVEEFPADLKF
YWLHFEVKAPDSDPRWLTHLSVPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAGV
SLAWKAQQLIRTHYHLPLSSAVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFND
VGYFRQIFRKHTGLTPTAWKRRYSKEHVNS
>Mature_270_residues
MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEECVFCVEAGESLLLWPHRRHIGVEEFPADLKF
YWLHFEVKAPDSDPRWLTHLSVPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAGV
SLAWKAQQLIRTHYHLPLSSAVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFND
VGYFRQIFRKHTGLTPTAWKRRYSKEHVNS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31386; Mature: 31386

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEECVFCVEAGESL
CEEEEEEEEEEECCCCEEEECCCCCCHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEE
LLWPHRRHIGVEEFPADLKFYWLHFEVKAPDSDPRWLTHLSVPQHTQVADPQALIALFRQ
EECCCHHCCCHHHCCCCEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
FMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAGVSLAWKAQQLIRTHYHLPLSS
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHCCCHHH
AVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFND
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VGYFRQIFRKHTGLTPTAWKRRYSKEHVNS
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEECVFCVEAGESL
CEEEEEEEEEEECCCCEEEECCCCCCHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEE
LLWPHRRHIGVEEFPADLKFYWLHFEVKAPDSDPRWLTHLSVPQHTQVADPQALIALFRQ
EECCCHHCCCHHHCCCCEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH
FMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAGVSLAWKAQQLIRTHYHLPLSS
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHCCCHHH
AVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFND
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VGYFRQIFRKHTGLTPTAWKRRYSKEHVNS
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377; 8407808 [H]