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The map label for this gene is radC

Identifier: 29144069

GI number: 29144069

Start: 3910451

End: 3911116

Strand: Direct

Name: radC

Synonym: t3789

Alternate gene names: 29144069

Gene position: 3910451-3911116 (Clockwise)

Preceding gene: 29144065

Following gene: 29144070

Centisome position: 81.6

GC content: 52.7

Gene sequence:

>666_bases
ATGGATACGTTGGACGAATTATTGCCGCGTGAAAAAATGCTCAGATCCGGCATTGCTTCCCTCAGCGACGTGGAACTGCT
GGCGCTTTTTTTACGTACCGGCACGCCGGGAAAAGATGTTATGACGTTGGCAAAAGAGATATTGCAGCACTTTGGGTCGC
TGTATGGCCTGCTGTCGGCGGACTTTGCGCAGTTTCGCGGCGTAAACGGCATCGGCCTGGCGAAATTCGCGCAGTTGAAA
GGCATTGCTGAGCTGGCAAGGCGCTATTACAGCGTGCGCATGAATGAGGAAAGTGCGTTGCTGAGTCCGGAAATGACGCG
GGAATTTCTGCAAAGCCAACTGACGGGCGAAGAGCGTGAGATCTTTCTGGTGATCTTCCTAGATGCCCAGCACCGGGTGC
TTCAGCACAGCCGCCTGTTTTCCGGCACGCTTAACCACGTAGAGGTGCATCCGCGTGAGATTGTTCGGGAAGCGATTAAA
CTCAATGCTTCAGCGGTCATTCTGGCGCATAATCACCCTTCAGGCTGCGCAGAGCCAAGTAAAGCAGATAAACTTATCAC
TGAGCGCGTGATAAAGTGTTGCCAGTTTATGGATATCCGGGTGCTCGATCACCTGATAATTGGGCGCGGAGAGTACGTTT
CTTTTGCCGAACGCGGCTGGATTTAA

Upstream 100 bases:

>100_bases
GCTCCACTTTGCGAGGCGCTACGCAAGAACAAAATCGGGGCGTCGATCTCTCCCAAAGGCTGTGCCACTATGCCGCTTCC
TTAAAAAAGGAGGTGCGCGT

Downstream 100 bases:

>100_bases
GATTCTTTGCGCGATCCATCGGGATCTTTGTCTGTTCGGGACTTGAGCATATCGCCGGGTCAGCGTATACTACGCCACCT
TTGAGAATCTCGGGTTTGGC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGVNGIGLAKFAQLK
GIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLDAQHRVLQHSRLFSGTLNHVEVHPREIVREAIK
LNASAVILAHNHPSGCAEPSKADKLITERVIKCCQFMDIRVLDHLIIGRGEYVSFAERGWI

Sequences:

>Translated_221_residues
MDTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGVNGIGLAKFAQLK
GIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLDAQHRVLQHSRLFSGTLNHVEVHPREIVREAIK
LNASAVILAHNHPSGCAEPSKADKLITERVIKCCQFMDIRVLDHLIIGRGEYVSFAERGWI
>Mature_221_residues
MDTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSADFAQFRGVNGIGLAKFAQLK
GIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEEREIFLVIFLDAQHRVLQHSRLFSGTLNHVEVHPREIVREAIK
LNASAVILAHNHPSGCAEPSKADKLITERVIKCCQFMDIRVLDHLIIGRGEYVSFAERGWI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family. YicR subfamily

Homologues:

Organism=Escherichia coli, GI87082300, Length=215, Percent_Identity=83.7209302325581, Blast_Score=386, Evalue=1e-109,
Organism=Escherichia coli, GI1788997, Length=121, Percent_Identity=48.7603305785124, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI2367100, Length=121, Percent_Identity=51.2396694214876, Blast_Score=133, Evalue=7e-33,
Organism=Escherichia coli, GI1788312, Length=121, Percent_Identity=50.4132231404959, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YICR_SALA4 (B5EXE3)

Other databases:

- EMBL:   CP001138
- RefSeq:   YP_002148661.1
- ProteinModelPortal:   B5EXE3
- SMR:   B5EXE3
- GeneID:   6797380
- GenomeReviews:   CP001138_GR
- KEGG:   sea:SeAg_B3946
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- HAMAP:   MF_00018
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- InterPro:   IPR022820
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 24890; Mature: 24890

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSA
CCCHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DFAQFRGVNGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEERE
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCCCCE
IFLVIFLDAQHRVLQHSRLFSGTLNHVEVHPREIVREAIKLNASAVILAHNHPSGCAEPS
EEEEEEECCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCH
KADKLITERVIKCCQFMDIRVLDHLIIGRGEYVSFAERGWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
>Mature Secondary Structure
MDTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQHFGSLYGLLSA
CCCHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DFAQFRGVNGIGLAKFAQLKGIAELARRYYSVRMNEESALLSPEMTREFLQSQLTGEERE
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCCCCE
IFLVIFLDAQHRVLQHSRLFSGTLNHVEVHPREIVREAIKLNASAVILAHNHPSGCAEPS
EEEEEEECCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCH
KADKLITERVIKCCQFMDIRVLDHLIIGRGEYVSFAERGWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA