Click here to switch to the map view.

The map label for this gene is ybeF [C]

Identifier: 29144062

GI number: 29144062

Start: 3904460

End: 3905362

Strand: Direct

Name: ybeF [C]

Synonym: t3782

Alternate gene names: 29144062

Gene position: 3904460-3905362 (Clockwise)

Preceding gene: 29144054

Following gene: 29144064

Centisome position: 81.48

GC content: 53.6

Gene sequence:

>903_bases
ATGAACTTGCTGCAAATGGATATGAACCTGTTAAAAGTACTGTATGTGCTGCTGGAGACGAGCTCTACGGGGAAAACGGC
GCAAAAGCTGGCTTTGTCGCCTTCTGCGGTGAGTCATGCGCTAATGAGATTGCGCGATGCGCTAAACGATCCGTTGTTTC
GACGGGAGGGGAACCGCCAGATTGCTACGCCTTATGCGCAGGCGCTGCGTGACAAGTTGGCGCCTGTGTTTGTTTCGCTT
AATGAGGAGCTGTTTGGCGATAAAGAGAACGGCTCCCGTTGTTTCCGGGTGGTACTTCCTCCCGCATTGAACGCGCTGCT
TACGCCCGTTCTCGCAGAGAAAGGTCATCTTCATCAGGCGGTGATCGAGTGCCTTCCTTTTGCCCGCCGACCCTGGCGTG
ATGAACTGTTGGATAGCTCGGTTGATTTGGTGCTGGCAATTGGCGACCATCAAAAGCAGGTCAGCGCTCTGCATTACGAG
CGGGTGGGGACGACGCGTTTGATCGCGGTTTATGGCGCGCCATTGCGTTCACGTCTGGAGAATGCCGCAGCGTTGAATTT
TGCTGATCTGCAGCATTATCAACACATTTACTGTTTGCCGTGGACAAAAGAGAACAACGAACTGGACAGGCAGCAGGCTC
GTGCCGGGTTTGAACGTCCGTTGGCGTTTGTTTGTCATGATTACAGTCAACTTGCGCCTGCTGTCCAGTCGGCGCCGCTA
ATGGCGATTGTACCGCGCCCCTGGTATGAAAATTTATCCGATAAGCGCGGTCTTTTTGTCCTGCCGCTTGCCGGGGAGCA
GGCGGAAGGCGCTATTTTTATGCAGTATCGGGCTTCGACGGTAGAGTGGAAGCGACGCCTTATCGACGCTATTCGCCGGA
AATTAAAAACGTACTACCGATAA

Upstream 100 bases:

>100_bases
TACAAAGAATAATACATAGCGATTCATAATGTTCTCCTGATTGAAGCGCCCGCAGTATACCTGGCAGTAATTTAGTCAGG
TTCAATAAGAGAGACGTTTA

Downstream 100 bases:

>100_bases
ACGCGAGAGCCCGCATAAGGCGGACTCTGTGACATATTGAGCGCCAGAATTATTCAATATTCTGGATCTGCTCGCGCATT
TGCTCGATCAACACTTTTAA

Product: regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; LysR Family Regulatory Protein; Transcriptional Regulator LysR; Regulatory Protein LysR; Regulatory Protein; HTH-Type Transcriptional Activator

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALNDPLFRREGNRQIATPYAQALRDKLAPVFVSL
NEELFGDKENGSRCFRVVLPPALNALLTPVLAEKGHLHQAVIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYE
RVGTTRLIAVYGAPLRSRLENAAALNFADLQHYQHIYCLPWTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPL
MAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYR

Sequences:

>Translated_300_residues
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALNDPLFRREGNRQIATPYAQALRDKLAPVFVSL
NEELFGDKENGSRCFRVVLPPALNALLTPVLAEKGHLHQAVIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYE
RVGTTRLIAVYGAPLRSRLENAAALNFADLQHYQHIYCLPWTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPL
MAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYR
>Mature_300_residues
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALNDPLFRREGNRQIATPYAQALRDKLAPVFVSL
NEELFGDKENGSRCFRVVLPPALNALLTPVLAEKGHLHQAVIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYE
RVGTTRLIAVYGAPLRSRLENAAALNFADLQHYQHIYCLPWTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPL
MAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081766, Length=300, Percent_Identity=25.6666666666667, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34087; Mature: 34087

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALNDPLFRREGNRQ
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCCCC
IATPYAQALRDKLAPVFVSLNEELFGDKENGSRCFRVVLPPALNALLTPVLAEKGHLHQA
CCCHHHHHHHHHHHHHEEECCHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHH
VIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYERVGTTRLIAVYGAPLRSRLE
HHHHHHCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHH
NAAALNFADLQHYQHIYCLPWTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPL
HHHHCCHHHHHHCCEEEEEECCCCCCHHHHHHHHCCHHCCHHHHHCCHHHHHHHHHCCCE
MAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYR
EEEECCCHHHCCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALNDPLFRREGNRQ
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCCCC
IATPYAQALRDKLAPVFVSLNEELFGDKENGSRCFRVVLPPALNALLTPVLAEKGHLHQA
CCCHHHHHHHHHHHHHEEECCHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHH
VIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYERVGTTRLIAVYGAPLRSRLE
HHHHHHCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHH
NAAALNFADLQHYQHIYCLPWTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPL
HHHHCCHHHHHHCCEEEEEECCCCCCHHHHHHHHCCHHCCHHHHHCCHHHHHHHHHCCCE
MAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYR
EEEECCCHHHCCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA