Click here to switch to the map view.

The map label for this gene is agaC [H]

Identifier: 29144036

GI number: 29144036

Start: 3863026

End: 3863775

Strand: Direct

Name: agaC [H]

Synonym: t3749

Alternate gene names: 29144036

Gene position: 3863026-3863775 (Clockwise)

Preceding gene: 29144035

Following gene: 29144037

Centisome position: 80.61

GC content: 56.27

Gene sequence:

>750_bases
ATGGATACCTTACTCTTTGCAAGCCTGATGGGGTTGTATTACTGGTTTGCCCGTTTACGCCTCGGCTACACCTTCTCCGC
GATGCTGTTACAACCGGTGGTGATCGCGGTATTTGTCGGGCTTTTGCTTGGCAATATGCAGACCGCGATGATCATCGGCG
CAGGGATGCAGCTCGTTTATTTGGGCGTGACCTCAACGCCGGGCGGCAACGTACCGTCGGACCCGGCGCTGGCGGCCTGT
ATCTCCATTCCTATCGCGGTGAAGGCCGGTATGGACCCAAACCTGGCGATCGCGCTGGCAATCCCGTTTGGCGTGATTGG
CGTGTTTCTCGATCAGCTGAGGCGCACGCTGAACGCCGCCTGGGTGCATATGGCGGATAAACACGCGGAAACGGCAAACA
TGGCGGGCATCATGCGTTGCGCCTTTCTTTACCCGGCATTGCTGGGGCTGGTGCTGCGCTTCCCGGTGGTCTTTGCCGCT
AACTACTTTGGCCAGGATGTGGTGGAAAGTTTCCTTAAACTGATGCCGCACTGGTTAACCCACTCCTTTGAAATCATGGG
CGGCATTCTGCCGGCGCTGGGCTTTGCCATCACCATTATGGTGATCGGTAAAAAGAGCCTGTTGCCGTGGTTTATCGGCG
GGTTCTTCGCGGTGTTATACCTCAAGGTCGACATCATGGCGATGGCCATCTTCGGCACCTGTGTCGCCTTCTTGATTAAA
GGCCTGGCGAAAAATGAAGGAGCAGCATGA

Upstream 100 bases:

>100_bases
CTGAGTGAATCCCCTGGAGCTTACTAAAGTAAGTGACTGGGGTGAGCGAAGGCAGCCAACAAAGAGGCAGCCTGAAGGAT
GAAGTGTATAGGATAACACT

Downstream 100 bases:

>100_bases
TGAGCAGTGACGTAATGCAACATGAACTGGTTGAGCGCGCGCGGGAAAGCGGGGCGCTGACCAAAGCAGATATCACCAAA
GCCTGGTTTATCTACTGGCT

Product: PTS system protein

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MDTLLFASLMGLYYWFARLRLGYTFSAMLLQPVVIAVFVGLLLGNMQTAMIIGAGMQLVYLGVTSTPGGNVPSDPALAAC
ISIPIAVKAGMDPNLAIALAIPFGVIGVFLDQLRRTLNAAWVHMADKHAETANMAGIMRCAFLYPALLGLVLRFPVVFAA
NYFGQDVVESFLKLMPHWLTHSFEIMGGILPALGFAITIMVIGKKSLLPWFIGGFFAVLYLKVDIMAMAIFGTCVAFLIK
GLAKNEGAA

Sequences:

>Translated_249_residues
MDTLLFASLMGLYYWFARLRLGYTFSAMLLQPVVIAVFVGLLLGNMQTAMIIGAGMQLVYLGVTSTPGGNVPSDPALAAC
ISIPIAVKAGMDPNLAIALAIPFGVIGVFLDQLRRTLNAAWVHMADKHAETANMAGIMRCAFLYPALLGLVLRFPVVFAA
NYFGQDVVESFLKLMPHWLTHSFEIMGGILPALGFAITIMVIGKKSLLPWFIGGFFAVLYLKVDIMAMAIFGTCVAFLIK
GLAKNEGAA
>Mature_249_residues
MDTLLFASLMGLYYWFARLRLGYTFSAMLLQPVVIAVFVGLLLGNMQTAMIIGAGMQLVYLGVTSTPGGNVPSDPALAAC
ISIPIAVKAGMDPNLAIALAIPFGVIGVFLDQLRRTLNAAWVHMADKHAETANMAGIMRCAFLYPALLGLVLRFPVVFAA
NYFGQDVVESFLKLMPHWLTHSFEIMGGILPALGFAITIMVIGKKSLLPWFIGGFFAVLYLKVDIMAMAIFGTCVAFLIK
GLAKNEGAA

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=226, Percent_Identity=30.5309734513274, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788121, Length=208, Percent_Identity=30.2884615384615, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 26786; Mature: 26786

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLLFASLMGLYYWFARLRLGYTFSAMLLQPVVIAVFVGLLLGNMQTAMIIGAGMQLVY
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEE
LGVTSTPGGNVPSDPALAACISIPIAVKAGMDPNLAIALAIPFGVIGVFLDQLRRTLNAA
EEEECCCCCCCCCCHHHHHHHHCCHHEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
WVHMADKHAETANMAGIMRCAFLYPALLGLVLRFPVVFAANYFGQDVVESFLKLMPHWLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
HSFEIMGGILPALGFAITIMVIGKKSLLPWFIGGFFAVLYLKVDIMAMAIFGTCVAFLIK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLAKNEGAA
HHHCCCCCC
>Mature Secondary Structure
MDTLLFASLMGLYYWFARLRLGYTFSAMLLQPVVIAVFVGLLLGNMQTAMIIGAGMQLVY
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEE
LGVTSTPGGNVPSDPALAACISIPIAVKAGMDPNLAIALAIPFGVIGVFLDQLRRTLNAA
EEEECCCCCCCCCCHHHHHHHHCCHHEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
WVHMADKHAETANMAGIMRCAFLYPALLGLVLRFPVVFAANYFGQDVVESFLKLMPHWLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
HSFEIMGGILPALGFAITIMVIGKKSLLPWFIGGFFAVLYLKVDIMAMAIFGTCVAFLIK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLAKNEGAA
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]