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The map label for this gene is ompL

Identifier: 29143905

GI number: 29143905

Start: 3705287

End: 3705979

Strand: Direct

Name: ompL

Synonym: t3605

Alternate gene names: 29143905

Gene position: 3705287-3705979 (Clockwise)

Preceding gene: 29143904

Following gene: 29143906

Centisome position: 77.32

GC content: 39.39

Gene sequence:

>693_bases
ATGAAATCTCTGAATACTCTAGTGATATTAACTTCAGTAATATCCACCTCTGTTTTTGCTGGCGCTTATGTAGAAAACCG
TGAGGCCTATAACCTGGCGTCTGACCAAATGGAGTTTATGCTGCGCGTCGGCTATAACTCCGATATGGGGGCCGGAATTA
TGTTGACCAATACCTATACGCTACAGCGTGATGATGAATTAAAGCACGGTTATAATGAGATTGAGGGCTGGTATCCGTTA
TTTAAACCTACAGATAAATTAACCATCCAGCCAGGCGGGTTAATAAACGACAAAAGCATTGGTTCCGGCGGCGCCGTCTA
TCTGGATATTAACTATAAATTTACCCCGTGGTTTAATCTTACGGTACGTAACCGATATAATCACAATAATTATAGTTCAA
CCGATTTGAATGGCGAACTGGATAATAATGACAGCTATGAAATCGGTAACTATTGGAATTTTATCATTACCGATAAATTT
TCTTATACCTTTGAACCACACTATTTTTATAACGTTAATGATTTTAATAGTAGTAATGGTACGAAGCATCATTGGGAAAT
CACTAATACCTTCCGTTATCGTATCAATGAACACTGGTTGCCCTACTTTGAATTACGCTGGTTAGATCGTAACGTGGGCC
TCTACCATAGAGAGCAAAACCAGATTCGTATCGGGGCGAAGTATTTCTTCTGA

Upstream 100 bases:

>100_bases
AATAAACAAAGTATTTCTACTGTAAATAATTAAACGACGCTTGCCGCTTTATTCATCCCGATGGATGGCGGCTTCCCTAT
ATTTGAAAAATGGATTTATT

Downstream 100 bases:

>100_bases
TATTATCGCCTCTATTTTCCGAATCTGCATCACAGCGGGTAGTTGTTCTGCCCGCTCATTCATCCTGAATCAGACTCCCG
ATATCCCGCCTCTAAGCGCC

Product: outer membrane porin L

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVGYNSDMGAGIMLTNTYTLQRDDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDINYKFTPWFNLTVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNVNDFNSSNGTKHHWEITNTFRYRINEHWLPYFELRWLDRNVGLYHREQNQIRIGAKYFF

Sequences:

>Translated_230_residues
MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVGYNSDMGAGIMLTNTYTLQRDDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDINYKFTPWFNLTVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNVNDFNSSNGTKHHWEITNTFRYRINEHWLPYFELRWLDRNVGLYHREQNQIRIGAKYFF
>Mature_230_residues
MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVGYNSDMGAGIMLTNTYTLQRDDELKHGYNEIEGWYPL
FKPTDKLTIQPGGLINDKSIGSGGAVYLDINYKFTPWFNLTVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKF
SYTFEPHYFYNVNDFNSSNGTKHHWEITNTFRYRINEHWLPYFELRWLDRNVGLYHREQNQIRIGAKYFF

Specific function: Outer membrane channel protein that allows an efficient diffusion of low-molecular-weight solutes such as small sugars and tetraglycine. However, the specific substrate recognized by the ompL channel is unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oligogalacturonate-specific porin kdgM (TC 1.B.35) family. OmpL subfamily

Homologues:

Organism=Escherichia coli, GI1790307, Length=230, Percent_Identity=87.3913043478261, Blast_Score=422, Evalue=1e-120,
Organism=Escherichia coli, GI87082420, Length=241, Percent_Identity=25.7261410788382, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OMPL_SALTI (Q8Z2T0)

Other databases:

- EMBL:   AL627279
- EMBL:   AE014613
- RefSeq:   NP_458034.1
- RefSeq:   NP_807247.1
- ProteinModelPortal:   Q8Z2T0
- GeneID:   1068254
- GeneID:   1250111
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t3605
- KEGG:   sty:STY3862
- HOGENOM:   HBG416663
- OMA:   KNGFIMK
- ProtClustDB:   PRK09980
- BioCyc:   SENT209261:T3605-MONOMER
- BioCyc:   SENT220341:STY3862-MONOMER
- InterPro:   IPR009331

Pfam domain/function: PF06178 KdgM

EC number: NA

Molecular weight: Translated: 27135; Mature: 27135

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVGYNSDMGAGIMLTNTYT
CCCCHHHHHHHHHHHHHHHHCEEECCCCCCCCCHHHEEEEEEECCCCCCCCCEEEEEEEE
LQRDDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDINYKFTPWFNL
ECCCCHHHCCHHHCCCEECCCCCCCEEEECCCCEECCCCCCCCCEEEEEEEEEECCEEEE
TVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKFSYTFEPHYFYNVNDFNSSNG
EEEECCCCCCCCCCCCCCEECCCCCEEECCEEEEEEEECEEEEECCEEEEEECCCCCCCC
TKHHWEITNTFRYRINEHWLPYFELRWLDRNVGLYHREQNQIRIGAKYFF
CEEEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCEEEEEEEECC
>Mature Secondary Structure
MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVGYNSDMGAGIMLTNTYT
CCCCHHHHHHHHHHHHHHHHCEEECCCCCCCCCHHHEEEEEEECCCCCCCCCEEEEEEEE
LQRDDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDINYKFTPWFNL
ECCCCHHHCCHHHCCCEECCCCCCCEEEECCCCEECCCCCCCCCEEEEEEEEEECCEEEE
TVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKFSYTFEPHYFYNVNDFNSSNG
EEEECCCCCCCCCCCCCCEECCCCCEEECCEEEEEEEECEEEEECCEEEEEECCCCCCCC
TKHHWEITNTFRYRINEHWLPYFELRWLDRNVGLYHREQNQIRIGAKYFF
CEEEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504