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The map label for this gene is ydeW [H]

Identifier: 29143850

GI number: 29143850

Start: 3647846

End: 3648805

Strand: Direct

Name: ydeW [H]

Synonym: t3545

Alternate gene names: 29143850

Gene position: 3647846-3648805 (Clockwise)

Preceding gene: 29143842

Following gene: 29143851

Centisome position: 76.12

GC content: 50.31

Gene sequence:

>960_bases
ATGAGCGATAATACGTTGGTATCTGATTATGGAATGTGCGAAGAAGAGCAGGTGGCGCGTATTGCCTGGTTCTACTATCA
CGATGGATTGACGCAGAGTGAAATCAGCGAGCGTCTGGGGCTAACCCGGCTAAAGGTTTCTCGTCTGCTGGAGAAAGGGC
ATCAGTCCGGTATTATTCGCGTACAAATCAACTCCCGTTTCGAAGGGTGTCTTGAGTATGAAAATGCCTTGCGTAACCAC
TTCGCATTGCAGAATATCCGCGTGCTGCCGGCATTACCCGATGCCGATATTGGTCTGCGCTTAGGAATCGGCGCCGCCCA
TATGTTGATGGAGTCACTGCGGCCACAGCAACTGCTGGCCGTCGGCTTTGGCGAAGCCACGATGACCACATTAAAACGCC
TCAGCGGATTTATCTCGGCGCAACAAATCCGACTGGTCACGTTATCCGGCGGCGTGGGGCCGTATATGACCGGAATAGGC
CAGCTTGATGCCGCTTGTAGCGTAAGTATTATGCCCGCGCCGCTGCGCGCATCATCGCAGGAAATTGCCTGCACGCTGCG
CAATGAAAATAGCGTGCGGGATGTGATGCTCACAGCGCAAGCTGCCGATGCCGCCATCGTGGGGATTGGGGCAATTAACC
AGAAAGATCAAGCCAGTATCTTAAAATCCGGCTATATCACTCAGGGTGAACAACTCATGATTGGCCGCAAAGGCGCAGTA
GGCGATATTCTGGGCTATTTTTTTGATGCTCATGGCGAAATTATTCCAGACATCAAAATCCATAACGAATTAATTGGCCT
GAAGTTAAATTCACTTTCCACGATCCCAACTGTGATTGGCGTCGCCGGCGGCGAACAAAAAGCAGAAGCTATTATTGCCG
CTATGCGCGGTAACTATATCAATGCGCTGGTTACCGATCAGAAAACCGCAGGGAAAATAATTCAACTTATTGAAAAATAA

Upstream 100 bases:

>100_bases
TGGCGCGTTTTTGTGGCGTTAATCACGGTTATTTCGGAGTGATAACTGAACAATTGTGTTAATGATTTAGAAATGTTCAA
AGTAAAGCCAGGTTATGACA

Downstream 100 bases:

>100_bases
AAAATAAAATAACACTTACCTCAATTCAATAAACAATAACTGACAGGATTTTATGTAACGATGTAAAAATAGCCGAGGGT
AAAAAAATGGCTCGACTCTG

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSDNTLVSDYGMCEEEQVARIAWFYYHDGLTQSEISERLGLTRLKVSRLLEKGHQSGIIRVQINSRFEGCLEYENALRNH
FALQNIRVLPALPDADIGLRLGIGAAHMLMESLRPQQLLAVGFGEATMTTLKRLSGFISAQQIRLVTLSGGVGPYMTGIG
QLDAACSVSIMPAPLRASSQEIACTLRNENSVRDVMLTAQAADAAIVGIGAINQKDQASILKSGYITQGEQLMIGRKGAV
GDILGYFFDAHGEIIPDIKIHNELIGLKLNSLSTIPTVIGVAGGEQKAEAIIAAMRGNYINALVTDQKTAGKIIQLIEK

Sequences:

>Translated_319_residues
MSDNTLVSDYGMCEEEQVARIAWFYYHDGLTQSEISERLGLTRLKVSRLLEKGHQSGIIRVQINSRFEGCLEYENALRNH
FALQNIRVLPALPDADIGLRLGIGAAHMLMESLRPQQLLAVGFGEATMTTLKRLSGFISAQQIRLVTLSGGVGPYMTGIG
QLDAACSVSIMPAPLRASSQEIACTLRNENSVRDVMLTAQAADAAIVGIGAINQKDQASILKSGYITQGEQLMIGRKGAV
GDILGYFFDAHGEIIPDIKIHNELIGLKLNSLSTIPTVIGVAGGEQKAEAIIAAMRGNYINALVTDQKTAGKIIQLIEK
>Mature_318_residues
SDNTLVSDYGMCEEEQVARIAWFYYHDGLTQSEISERLGLTRLKVSRLLEKGHQSGIIRVQINSRFEGCLEYENALRNHF
ALQNIRVLPALPDADIGLRLGIGAAHMLMESLRPQQLLAVGFGEATMTTLKRLSGFISAQQIRLVTLSGGVGPYMTGIGQ
LDAACSVSIMPAPLRASSQEIACTLRNENSVRDVMLTAQAADAAIVGIGAINQKDQASILKSGYITQGEQLMIGRKGAVG
DILGYFFDAHGEIIPDIKIHNELIGLKLNSLSTIPTVIGVAGGEQKAEAIIAAMRGNYINALVTDQKTAGKIIQLIEK

Specific function: In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFGE operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho- AI-2, leading to the transcription of the lsr genes [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=313, Percent_Identity=77.3162939297125, Blast_Score=509, Evalue=1e-145,
Organism=Escherichia coli, GI87082414, Length=321, Percent_Identity=24.2990654205607, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34450; Mature: 34319

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNTLVSDYGMCEEEQVARIAWFYYHDGLTQSEISERLGLTRLKVSRLLEKGHQSGIIR
CCCCCEECCCCCCCHHHHHHEEEEEEECCCCHHHHHHHHCHHHHHHHHHHHCCCCCCEEE
VQINSRFEGCLEYENALRNHFALQNIRVLPALPDADIGLRLGIGAAHMLMESLRPQQLLA
EEECCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCEEECCCHHHHHHHHCCHHHEEE
VGFGEATMTTLKRLSGFISAQQIRLVTLSGGVGPYMTGIGQLDAACSVSIMPAPLRASSQ
EECCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHCCCCCCCCEEEEEECCCCCCCCC
EIACTLRNENSVRDVMLTAQAADAAIVGIGAINQKDQASILKSGYITQGEQLMIGRKGAV
EEEEEECCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEEECCCCH
GDILGYFFDAHGEIIPDIKIHNELIGLKLNSLSTIPTVIGVAGGEQKAEAIIAAMRGNYI
HHHHHHHHHCCCCCCCCEEECCEEEEEEECCCCHHHHHEECCCCCHHHHHHHHHHCCCEE
NALVTDQKTAGKIIQLIEK
EEEEECCHHHHHHHHHHCC
>Mature Secondary Structure 
SDNTLVSDYGMCEEEQVARIAWFYYHDGLTQSEISERLGLTRLKVSRLLEKGHQSGIIR
CCCCEECCCCCCCHHHHHHEEEEEEECCCCHHHHHHHHCHHHHHHHHHHHCCCCCCEEE
VQINSRFEGCLEYENALRNHFALQNIRVLPALPDADIGLRLGIGAAHMLMESLRPQQLLA
EEECCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCEEECCCHHHHHHHHCCHHHEEE
VGFGEATMTTLKRLSGFISAQQIRLVTLSGGVGPYMTGIGQLDAACSVSIMPAPLRASSQ
EECCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHCCCCCCCCEEEEEECCCCCCCCC
EIACTLRNENSVRDVMLTAQAADAAIVGIGAINQKDQASILKSGYITQGEQLMIGRKGAV
EEEEEECCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEEECCCCH
GDILGYFFDAHGEIIPDIKIHNELIGLKLNSLSTIPTVIGVAGGEQKAEAIIAAMRGNYI
HHHHHHHHHCCCCCCCCEEECCEEEEEEECCCCHHHHHEECCCCCHHHHHHHHHHCCCEE
NALVTDQKTAGKIIQLIEK
EEEEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA