Click here to switch to the map view.

The map label for this gene is yijO [H]

Identifier: 29143813

GI number: 29143813

Start: 3603703

End: 3604539

Strand: Direct

Name: yijO [H]

Synonym: t3507

Alternate gene names: 29143813

Gene position: 3603703-3604539 (Clockwise)

Preceding gene: 29143812

Following gene: 29143814

Centisome position: 75.2

GC content: 56.15

Gene sequence:

>837_bases
ATGTATCACGACGTCAGCCACCTTCTCTCCCGTCTCATCAACGGCCCGCTGCCGCTGCGCCAGATTTATTTTGCCAGCGC
CAGCGGCCCAGCGCCGGAACTGGCGTACCAGGTGGATTTTCCGCGGCTGGAGATTGTGCTGGAGGGCGAGCTTACTGACA
TGAGCATTACCGCCCCGCTCATTCCTTGCGATGTTCTCTACGTTCCGGCTGGCGGCTGGAACATCCCGCAGTGGCAAACG
CCCGTCACCACCCTGAGCATTCTGTTTGGCAAACAGCAGTTAGGTTTCAGCGTGGTCTACTGGGACGGTCAGCAGCATCA
AAACCTCACGAAACAGCACGTTGCGCGCCGTGGCCCGCGTATCGGCTCGTTCCTGTTACAAACGCTTAATGAGATGCAGA
TGCAGCCGCAAGAGCAGCAAACGGCCAGATTGATTGTCGCCAGCCTACTAAGCCATTGCCGCGATCTGCTCGGCAGCCAA
ATCCAGACCGCCTCCCGTAGCCGTGCGCTTTTTGAAGCCATTCGGGAGTATATTGATGAACGCTACGCCGCGCCGTTGAC
GCGCGAATCGGTAGCACAGGCGTTTTATATCTCGCCAAATTACCTCTCGCACCTGTTCCAGAAAACGGGAGCCATCGGCT
TTAACGAATACCTGAACCATACGCGACTGGAACACGCCAAAACGTTGCTGAAGGGCTATGACCTGAAAGTGAAAGAGGTG
GCGCACCGCTGCGGCTTTGTCGACAGTAACTATTTCTGCCGCCTGTTTCGCAAAAATACGGAACGTTCGCCTTCGGAGTA
TCGCCGCCAGTATCACAGCCAGCTAACGGAGAAATAA

Upstream 100 bases:

>100_bases
CCGGATAAGGCGCAAAGCGCCGCTATCCGGCAATAATTGCTTGAGGACATCGGTTTTCGACGTTACTGTTTCCTCTGTTT
GCGATCGGCAGGGGATTATC

Downstream 100 bases:

>100_bases
TCCACACGCCAATAAAGAGAATACAGTAGATAAAACGCGCATTTACTGGATTATTGTAATATCAATGCAAAAACCTCACT
CCCCCACATGGCATACAACA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDMSITAPLIPCDVLYVPAGGWNIPQWQT
PVTTLSILFGKQQLGFSVVYWDGQQHQNLTKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
IQTASRSRALFEAIREYIDERYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEK

Sequences:

>Translated_278_residues
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDMSITAPLIPCDVLYVPAGGWNIPQWQT
PVTTLSILFGKQQLGFSVVYWDGQQHQNLTKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
IQTASRSRALFEAIREYIDERYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEK
>Mature_278_residues
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDMSITAPLIPCDVLYVPAGGWNIPQWQT
PVTTLSILFGKQQLGFSVVYWDGQQHQNLTKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
IQTASRSRALFEAIREYIDERYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=278, Percent_Identity=89.568345323741, Blast_Score=500, Evalue=1e-143,
Organism=Escherichia coli, GI1788725, Length=279, Percent_Identity=36.2007168458781, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1790339, Length=162, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31902; Mature: 31902

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDMSITAPL
CCCCHHHHHHHHHCCCCCHHHHEEECCCCCCCCCEEEECCCEEEEEEECCCCCCEEECCC
IPCDVLYVPAGGWNIPQWQTPVTTLSILFGKQQLGFSVVYWDGQQHQNLTKQHVARRGPR
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHCCCH
IGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSRALFEAIREYIDE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
HHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEK
HHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDMSITAPL
CCCCHHHHHHHHHCCCCCHHHHEEECCCCCCCCCEEEECCCEEEEEEECCCCCCEEECCC
IPCDVLYVPAGGWNIPQWQTPVTTLSILFGKQQLGFSVVYWDGQQHQNLTKQHVARRGPR
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHCCCH
IGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSRALFEAIREYIDE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
HHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEK
HHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]