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The map label for this gene is rsD [H]

Identifier: 29143780

GI number: 29143780

Start: 3554955

End: 3555443

Strand: Direct

Name: rsD [H]

Synonym: t3466

Alternate gene names: 29143780

Gene position: 3554955-3555443 (Clockwise)

Preceding gene: 29143773

Following gene: 29143781

Centisome position: 74.19

GC content: 49.28

Gene sequence:

>489_bases
ATGCTAAACCAGCTGGAAAACCTGATGGAGCGCGTTGGCGGAAGCAACAAACTGGTCGATCGCTGGCTGGATGTACGTAA
GCACCTGCTCGTGGCTTACTACAATCTGGTTGGCATTAAGCCTGGCAAAGAATCGTACATGCGGCTGAATGAAAAAGCGC
TGGATGATTTTTGTCAGAGCCTGGTCGATTACCTTTCCGCCGGGCACTTCAGTATTTATGAACGTATTCTCCATAAATTG
GAAGGAAACGGTCAGCTTTTACATGCGGCAAAAATTTGGCCGCTGCTGGAAGATAATACGCAGCGCATTATGGATTATTA
CGACACCAGCCTGGAAACTGCCATCGATCACGATAATTGTCTCGAATTTCAACAAGCTCTGTCAGATATCGGCGAAGCGC
TGGAAGCCCGCTTTGTGCTGGAAGACAAGCTGATTATGCTGGTGTTTGACGCGATGCACGACGGCGCCAGAGTCAAACGT
CCCGCTTGA

Upstream 100 bases:

>100_bases
CGATCCATAGCTATTGCACTACCTTTGCTTCACTGGCATGTTGTTAACATTATTTTTACATTCATGGCGAGCAGCCTTTA
TCTAACTTGCGGAGACAATC

Downstream 100 bases:

>100_bases
GTTCTGCGCGAGTAACAGGTAGTTTACTTCAGCCCCCTCTTCGGAGGGGCGGTTATCTTGTCGGAGTGCTAATTTTCCAC
AAAAGCGTTCGTGATGCGTC

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MLNQLENLMERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
PA

Sequences:

>Translated_162_residues
MLNQLENLMERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
PA
>Mature_162_residues
MLNQLENLMERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
PA

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=162, Percent_Identity=88.2716049382716, Blast_Score=285, Evalue=1e-78,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 18684; Mature: 18684

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQLENLMERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC
HHHHHHCCCHHHHHHHHHHHCCCCCEEHHHHHCCHHHCHHHHHHHHHHHHHHHHCCCHHH
LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLNQLENLMERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC
HHHHHHCCCHHHHHHHHHHHCCCCCEEHHHHHCCHHHCHHHHHHHHHHHHHHHHCCCHHH
LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA