Click here to switch to the map view.

The map label for this gene is nudC [H]

Identifier: 29143779

GI number: 29143779

Start: 3554089

End: 3554862

Strand: Reverse

Name: nudC [H]

Synonym: t3465

Alternate gene names: 29143779

Gene position: 3554862-3554089 (Counterclockwise)

Preceding gene: 29143787

Following gene: 29143778

Centisome position: 74.18

GC content: 55.56

Gene sequence:

>774_bases
ATGGATCGTATAATTGAAAAATTAGAGAGTGGCTGGTGGATCGTCAGCCATGAACAAAAATTATGGTTGCCGTATGGGGA
ATTACCACACGGGCTGGCGGCAAATTTCGATCTTGTGGGGCAGCGCGCACTCCGGATAGGTGAATGGCAAGGCGAGCCCG
TCTGGCTGGTGTTACAGCATCGACGTCATGATATGGGATCGGTTCGCCAGGTTATCGATCAGGATGCCGGGCTGTTTCAA
CTGGCGGGACGTGGCGTACAGTTGGCGGAGTTTTATCGTTCGCATAAATTTTGCGGCTATTGCGGGCACCCTATGCACCC
GAGTAAAACCGAATGGGCGATGCTGTGCAGCCATTGCCGCGATCGTTACTACCCGCAAATCGCCCCCTGCATTATTGTTG
CCATTCGCCGTGAGGATTCTATTCTACTTGCCCGGCACGTTCGCCACCGCAACGGCGTGCATACGGTACTGGCCGGGTTT
GTTGAAGTCGGCGAAACCCTGGAGCAGGCTGTGGCGCGCGAAGTCATGGAGGAAAGCGGGATCAAGGTGAAAAATCTGCG
CTACGTGACCTCGCAGCCGTGGCCGTTCCCACAGTCGCTGATGACGGCGTTTATGGCAGAGTATGACAGCGGCGAGATTG
TCATCGACCCGAAAGAACTGTTGGAAGCAAATTGGTACCGTTATGACGATCTGCCGCTACTGCCGCCGCCGGGCACCGTC
GCGCGCCGTTTGATCGAAGATACGGTGGCAATGTGTCGGGCTGAATACGACTGA

Upstream 100 bases:

>100_bases
TTTAGCATGATTGTCTCCGCAAGTTAGATAAAGGCTGCTCGCCATGAATGTAAAAATAATGTTAACAACATGCCAGTGAA
GCAAAGGTAGTGCAATAGCT

Downstream 100 bases:

>100_bases
CATGTTACACTGGGCGCATCAACGCTAAAGGAATGTAAAAATGACCGAACTCAAAAACGATCGTTATCTACGTGCGCTGC
TGCGCCAGCCCGTTGATGTT

Product: NADH pyrophosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRALRIGEWQGEPVWLVLQHRRHDMGSVRQVIDQDAGLFQ
LAGRGVQLAEFYRSHKFCGYCGHPMHPSKTEWAMLCSHCRDRYYPQIAPCIIVAIRREDSILLARHVRHRNGVHTVLAGF
VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGEIVIDPKELLEANWYRYDDLPLLPPPGTV
ARRLIEDTVAMCRAEYD

Sequences:

>Translated_257_residues
MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRALRIGEWQGEPVWLVLQHRRHDMGSVRQVIDQDAGLFQ
LAGRGVQLAEFYRSHKFCGYCGHPMHPSKTEWAMLCSHCRDRYYPQIAPCIIVAIRREDSILLARHVRHRNGVHTVLAGF
VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGEIVIDPKELLEANWYRYDDLPLLPPPGTV
ARRLIEDTVAMCRAEYD
>Mature_257_residues
MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRALRIGEWQGEPVWLVLQHRRHDMGSVRQVIDQDAGLFQ
LAGRGVQLAEFYRSHKFCGYCGHPMHPSKTEWAMLCSHCRDRYYPQIAPCIIVAIRREDSILLARHVRHRNGVHTVLAGF
VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGEIVIDPKELLEANWYRYDDLPLLPPPGTV
ARRLIEDTVAMCRAEYD

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=203, Percent_Identity=32.0197044334975, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI50593112, Length=170, Percent_Identity=35.2941176470588, Blast_Score=105, Evalue=6e-23,
Organism=Escherichia coli, GI48994995, Length=257, Percent_Identity=92.2178988326848, Blast_Score=496, Evalue=1e-142,
Organism=Caenorhabditis elegans, GI212645999, Length=152, Percent_Identity=32.2368421052632, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71986510, Length=152, Percent_Identity=32.2368421052632, Blast_Score=77, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6321371, Length=177, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 29621; Mature: 29621

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRALRIGEWQGEPVWLVLQH
CCHHHHHHHCCCEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEH
RRHDMGSVRQVIDQDAGLFQLAGRGVQLAEFYRSHKFCGYCGHPMHPSKTEWAMLCSHCR
HCCCHHHHHHHHHCCCCEEEHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
DRYYPQIAPCIIVAIRREDSILLARHVRHRNGVHTVLAGFVEVGETLEQAVAREVMEESG
HCCCCCHHHHHEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGEIVIDPKELLEANWYRYDDLPLLPPPGTV
CEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHCCCEEECCCCCCCCCHHH
ARRLIEDTVAMCRAEYD
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRALRIGEWQGEPVWLVLQH
CCHHHHHHHCCCEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEH
RRHDMGSVRQVIDQDAGLFQLAGRGVQLAEFYRSHKFCGYCGHPMHPSKTEWAMLCSHCR
HCCCHHHHHHHHHCCCCEEEHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
DRYYPQIAPCIIVAIRREDSILLARHVRHRNGVHTVLAGFVEVGETLEQAVAREVMEESG
HCCCCCHHHHHEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGEIVIDPKELLEANWYRYDDLPLLPPPGTV
CEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEECHHHHHHCCCEEECCCCCCCCCHHH
ARRLIEDTVAMCRAEYD
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA