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The map label for this gene is yciR [C]

Identifier: 29143635

GI number: 29143635

Start: 3397022

End: 3398632

Strand: Direct

Name: yciR [C]

Synonym: t3302

Alternate gene names: 29143635

Gene position: 3397022-3398632 (Clockwise)

Preceding gene: 29143634

Following gene: 29143636

Centisome position: 70.89

GC content: 55.56

Gene sequence:

>1611_bases
ATGCCGGTTAGTGAGTACAACCACATCCTTGTGGCGGTTTCATTTGCTGTCGCTATTTTTGCGTCCTATACCGCATTAAA
TATGGCCGGACGCGTAGCCGGAAGCGCCCGATCAAACGCCAGAATATGGCTAATGGGCGGCGGCTTCGCGCTGGGCGTCG
GTATTTGGGAGATGCATTTTGTCGGGATGCTGGCGATGGATCACGCGATGAACATGCGCTTCGATCCGTTCCTCACCGGC
CTCTCCATGCTGATCGCGATCGGCTCCTCCCTGTTTGCGCTATGGCTGGTTAGCGCTGAAAAACTGCGCCTGCGCCGTTT
ACTGCCGGGCGCGCTGGTGATGGGACTGGGCATCAGCGCAATGCATTATACCGGGATGGCGGCGCTGCAATTTGCTTCCA
TTATCGTTTGGAATAGCGCGTGGGTTGCCCTCTCTATCATTATCGCGCTACTGGCGTCCTGCGGCGCGCTGTGGCTCACG
TTCCGCCTGCGTAATGAGGGAACAGATGTCGCCCTGAGGCGAGCAGGCGCCGCGGTATTAATGGGGATAGCTATCGCCGG
CATGCATTACGCCGGCATGAAGGCCGCACACTTTCCCCAAAACTGGCCGATGGAACATCGTGGCGTCGATAGCAACTGGC
TGGCTGTTCTTGTCAGCGTGGTCGCGCTGACTATCCTGGGTATTACTCTGCTGGTTTCTTTATTTGACGCCCGGCTTCAG
GCCCGTACCGCACTACTTGCCTCTTCGCTGGCGCAGGCGAACCAGGAACTGGCGCAGTTGGCGCTGCATGATACGCTCAC
CCGTTTACCAAACCGGGTACTCCTTGAGGATCGTCTGGAACAGGCCATCAGCAAAGCGAATCGGGAAAGCACGTCTTTCG
CGCTACTGTTTATGGATCTGGATGGCTTTAAAGCCGTTAATGACGCTTATGGTCATGATATTGGCGATAAGCTACTGGTG
GCGGTCACGCATCGTCTGAACCAACCGCTGAGCGGGCAGTTTACCCTGGCGCGGATTGGCGGCGACGAATTTGTGCTGCT
TGCGGAAGTCAGCGCGCCTGACGAAGCGGCTTCCCTTGCCAGCGCGCTGGTACATTCGATAGATGCGCCCTTTACGATAG
ATCCGTACGAACTGGTTGTCACCCTTAGCGTGGGAATAGCGCTCTATCCGCTGGACGGAAAAAACGAACGGGAACTGATG
TTCAACGCCGATGCCGCGATGTACCACACGAAGCATACGGGGCGTAACGGATACCATTTCTTTCAGCCATCAATGAATAT
GCTGGCGCAAACCCAACTTCAGCTAATGAATGACCTGTGGCTGGCGCTGGAAAGACAAGAGCTCAGGCTGGTGTATCAGC
CTAAATTTCAGGCTCCTGCCGGCCCCATTGTAGGATTTGAGGCCCTGTTGCGCTGGTATCATCCAAAACAAGGCGTACTG
AATCCTGACCAGTTTTTACCGCTGGCGGAAAAAACGGGTCTTATCGTCACTATCGGTAGCTGGGTGATAGACGAGGCGTG
TCGACAGCTCCGCGAGTGGCACTTACAGGGATACGCCTTATGGTCAGTGGCGGTAACTGGTAATGGAAAATGGTCAGGTC
TACCCGATTAA

Upstream 100 bases:

>100_bases
CCCTTATAAAAACAGGGAATTAAAACACGTTGAGGATAAAAGAAGGGGTGATACTGTCTCGTCCTGTTCTTTTCCTGCAT
AACCAATGAGCTAATGATAC

Downstream 100 bases:

>100_bases
AGGCACGCTGCAATTTTCCGACGTTACCGTAGATGAAAGCACCGGCTCTATCACGCTCAGGGCGGTGTTCCCTAACCCGC
AACACAGTCTGCTTCCCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MPVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWLMGGGFALGVGIWEMHFVGMLAMDHAMNMRFDPFLTG
LSMLIAIGSSLFALWLVSAEKLRLRRLLPGALVMGLGISAMHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLT
FRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQ
ARTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLV
AVTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLASALVHSIDAPFTIDPYELVVTLSVGIALYPLDGKNERELM
FNADAAMYHTKHTGRNGYHFFQPSMNMLAQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVL
NPDQFLPLAEKTGLIVTIGSWVIDEACRQLREWHLQGYALWSVAVTGNGKWSGLPD

Sequences:

>Translated_536_residues
MPVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWLMGGGFALGVGIWEMHFVGMLAMDHAMNMRFDPFLTG
LSMLIAIGSSLFALWLVSAEKLRLRRLLPGALVMGLGISAMHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLT
FRLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQ
ARTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLV
AVTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLASALVHSIDAPFTIDPYELVVTLSVGIALYPLDGKNERELM
FNADAAMYHTKHTGRNGYHFFQPSMNMLAQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVL
NPDQFLPLAEKTGLIVTIGSWVIDEACRQLREWHLQGYALWSVAVTGNGKWSGLPD
>Mature_535_residues
PVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWLMGGGFALGVGIWEMHFVGMLAMDHAMNMRFDPFLTGL
SMLIAIGSSLFALWLVSAEKLRLRRLLPGALVMGLGISAMHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLTF
RLRNEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQA
RTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRESTSFALLFMDLDGFKAVNDAYGHDIGDKLLVA
VTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLASALVHSIDAPFTIDPYELVVTLSVGIALYPLDGKNERELMF
NADAAMYHTKHTGRNGYHFFQPSMNMLAQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLN
PDQFLPLAEKTGLIVTIGSWVIDEACRQLREWHLQGYALWSVAVTGNGKWSGLPD

Specific function: Unknown

COG id: COG3300

COG function: function code T; MHYT domain (predicted integral membrane sensor domain)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=269, Percent_Identity=38.6617100371747, Blast_Score=179, Evalue=6e-46,
Organism=Escherichia coli, GI87081921, Length=290, Percent_Identity=35.8620689655172, Blast_Score=169, Evalue=5e-43,
Organism=Escherichia coli, GI226510982, Length=267, Percent_Identity=29.2134831460674, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=33.7209302325581, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=34.5454545454545, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=34.0540540540541, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787802, Length=220, Percent_Identity=28.1818181818182, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=32.3170731707317, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=29.8780487804878, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=30.5389221556886, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=30.7228915662651, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=29.559748427673, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=177, Percent_Identity=27.683615819209, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081881, Length=163, Percent_Identity=33.1288343558282, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786507, Length=56, Percent_Identity=53.5714285714286, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1790496, Length=86, Percent_Identity=39.5348837209302, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 58675; Mature: 58544

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWLMGGGFALGVGIWEMHF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEHHHHHHHHH
VGMLAMDHAMNMRFDPFLTGLSMLIAIGSSLFALWLVSAEKLRLRRLLPGALVMGLGISA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHH
MHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLTFRLRNEGTDVALRRAGAAVL
HHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHH
MGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQ
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRESTSFALLFMDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
DGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLA
CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHH
SALVHSIDAPFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHF
HHHHHHCCCCCEECHHHEEEEEECCEEEEECCCCCCCEEEEECCHHEEEECCCCCCCCEE
FQPSMNMLAQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVL
ECCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC
NPDQFLPLAEKTGLIVTIGSWVIDEACRQLREWHLQGYALWSVAVTGNGKWSGLPD
CHHHCCCCHHHCCEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
PVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWLMGGGFALGVGIWEMHF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEHHHHHHHHH
VGMLAMDHAMNMRFDPFLTGLSMLIAIGSSLFALWLVSAEKLRLRRLLPGALVMGLGISA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHH
MHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLTFRLRNEGTDVALRRAGAAVL
HHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHH
MGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQ
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRESTSFALLFMDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
DGFKAVNDAYGHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLA
CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHH
SALVHSIDAPFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHF
HHHHHHCCCCCEECHHHEEEEEECCEEEEECCCCCCCEEEEECCHHEEEECCCCCCCCEE
FQPSMNMLAQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVL
ECCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC
NPDQFLPLAEKTGLIVTIGSWVIDEACRQLREWHLQGYALWSVAVTGNGKWSGLPD
CHHHCCCCHHHCCEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]