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The map label for this gene is ttdB [H]

Identifier: 29143602

GI number: 29143602

Start: 3361339

End: 3361956

Strand: Reverse

Name: ttdB [H]

Synonym: t3269

Alternate gene names: 29143602

Gene position: 3361956-3361339 (Counterclockwise)

Preceding gene: 29143603

Following gene: 29143601

Centisome position: 70.16

GC content: 46.44

Gene sequence:

>618_bases
ATGACTAAAAAAATCCTGACTACGCCAATTAAAGATGAAGATTTAGCGGATATTAAGGCTGGCGATATTATTTATCTCAA
CGGTCATATTGTTACCTGCCGTGACGTAGCCCATCGCCGTTTAATTGAAGGTGGTCGCGAACTTCCGGTAGATGTTCGCG
GCGGCGCTATTTTACACGCTGGCCCCATTGTCCGCCCAATTAAAGGCGAAGACGATAAGTTTGAAATGGTCTCCGTTGGC
CCAACCACCAGCATGCGTATGGAGAAATTCGAAAAAGAGTTTATTGCGCAGACTGGCGTGAAATTAATTGTAGGTAAAGG
CGGTATGGGTAAAGGTACCGAAGAGGGCTGTGCTGAACACAAAGCGCTGCACTGCGTATTCCCTGCCGGTTGTGCGGTTG
TAGCCGCCGTGTGCGTGGAAGAAATTGAAGATGCCCAATGGCGCGATCTGGGGATGCCGGAAACGCTGTGGGTCTGTCGG
GTTAAAGAGTTTGGCCCGCTGATTGTTTCTATTGATACCCATGGGAATAATCTGTTTGAACAGAACAAAATTATTTTTAA
TCAGCGTAAAGAGATCGTCGCTGATGAAATATGCCAGAACGTAAGTTTCATCAAATAA

Upstream 100 bases:

>100_bases
TGGCGGTAAACGTCGGCTGCTGGTCGCACCGTAAAGGGCACATCGTTTTCGATAAAGATTTGAATTACACCATTACGTCT
CACAGCGGAGTGAATTTCTG

Downstream 100 bases:

>100_bases
ACCTGATTACGTAAATTGCACGATAATGGTGGTAATACGTTATGACGATAATAATAACCAAGGGCTCTGGCCGGGGCGGC
TCAGGGAAATCCACCCTTAT

Product: L(+)-tartrate dehydratase subunit beta

Products: NA

Alternate protein names: L-TTD beta [H]

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEGGRELPVDVRGGAILHAGPIVRPIKGEDDKFEMVSVG
PTTSMRMEKFEKEFIAQTGVKLIVGKGGMGKGTEEGCAEHKALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCR
VKEFGPLIVSIDTHGNNLFEQNKIIFNQRKEIVADEICQNVSFIK

Sequences:

>Translated_205_residues
MTKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEGGRELPVDVRGGAILHAGPIVRPIKGEDDKFEMVSVG
PTTSMRMEKFEKEFIAQTGVKLIVGKGGMGKGTEEGCAEHKALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCR
VKEFGPLIVSIDTHGNNLFEQNKIIFNQRKEIVADEICQNVSFIK
>Mature_204_residues
TKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEGGRELPVDVRGGAILHAGPIVRPIKGEDDKFEMVSVGP
TTSMRMEKFEKEFIAQTGVKLIVGKGGMGKGTEEGCAEHKALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCRV
KEFGPLIVSIDTHGNNLFEQNKIIFNQRKEIVADEICQNVSFIK

Specific function: Unknown

COG id: COG1838

COG function: function code C; Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I fumarase family [H]

Homologues:

Organism=Escherichia coli, GI1789443, Length=203, Percent_Identity=69.4581280788177, Blast_Score=291, Evalue=2e-80,
Organism=Escherichia coli, GI1787897, Length=182, Percent_Identity=29.1208791208791, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790564, Length=182, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004647 [H]

Pfam domain/function: PF05683 Fumerase_C [H]

EC number: =4.2.1.32 [H]

Molecular weight: Translated: 22613; Mature: 22481

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEGGRELPVDVRGGAILHA
CCCCEECCCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHCCCCCCEEECCCEEEEC
GPIVRPIKGEDDKFEMVSVGPTTSMRMEKFEKEFIAQTGVKLIVGKGGMGKGTEEGCAEH
CCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
KALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCRVKEFGPLIVSIDTHGNNLFE
CEEEEECCHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHH
QNKIIFNQRKEIVADEICQNVSFIK
CCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEGGRELPVDVRGGAILHA
CCCEECCCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHCCCCCCEEECCCEEEEC
GPIVRPIKGEDDKFEMVSVGPTTSMRMEKFEKEFIAQTGVKLIVGKGGMGKGTEEGCAEH
CCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
KALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCRVKEFGPLIVSIDTHGNNLFE
CEEEEECCHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHH
QNKIIFNQRKEIVADEICQNVSFIK
CCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]