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The map label for this gene is yhcM [H]

Identifier: 29143595

GI number: 29143595

Start: 3352648

End: 3353772

Strand: Reverse

Name: yhcM [H]

Synonym: t3262

Alternate gene names: 29143595

Gene position: 3353772-3352648 (Counterclockwise)

Preceding gene: 29143599

Following gene: 29143594

Centisome position: 69.99

GC content: 55.47

Gene sequence:

>1125_bases
ATGCAAAGTCTTTCCCCTACATCGCGTTATCTCCAGGCACTCAACGAAGGCACCCATCAGCCTGACGACGTACAGAAAGA
GGCGGTCGACCGTCTGGAAACCCTTTATCAGGCGCTCACCGCGAAAAAATCGTCGGCTACGCCACCCGGCGGTCTGATAG
CGCGACTGGGGAAATTATTAGGCAAAAACGAACCGGACGCGCAAATACCGGTTCGCGGGCTGTATATGTGGGGGGGCGTG
GGTCGCGGCAAAACCTGGCTCATGGATCTCTTCTACCACAGCCTGCCGGGTGAGCGAAAATTGCGCCTGCATTTTCATCG
GTTTATGCTGCGCGTGCATGAAGAGCTTACCGCGCTACAGGGACAGATCGATCCGTTAGACATTATTGCCGATCGGTTTA
AAACCGAGACGGACGTACTGTGTTTCGATGAGTTTTTCGTCACCGATATTACCGACGCCATGCTGCTGGGCGGTTTAATG
AAAGCGCTGTTTGCACGCGGCATTACGCTGGTCGCGACCTCCAATATTCCGCCGGAGGAACTCTACCGCAACGGTTTGCA
ACGCGCCCGCTTCCTGCCGGCTATCGATGCCATTAAACAGCACTGCGACATTATGAATGTGGACGCCGGCGTCGATTACC
GGCTGCGGACGCTGACGCAGGCCCATTTATGGCTAACGCCGCTTAATGATGAAACCCGGCGGCAAATGGATAAACTGTGG
CTGGCGTTAGCGGGGGCCGCACGAGAACATGCTCCGACGCTGGAAATCAATCATCGCCCTTTATCCACCCTGGGCGTTGA
AAACCAAACGTTAGCGGCCTCTTTCGCTACGCTGTGCGTCGAGGCTCGCAGCCAGCATGATTACATTGCGCTCTCAAGGT
TATTTCACACGGTTCTGTTGTTTGACGTGCCGGTCATGACGCCGCTGATGGAGAACGAAGCGCGCCGCTTTATTGCGCTG
GTGGATGAGTTTTACGAGCGCCACGTTAAGCTGGTGGTCAGCGCCGCCGCGCCGTTATATGAGATTTATCAGGGGGAGCG
ACTCAAGTTTGAATTTCAGCGCTGTCTGTCGCGCCTGCAAGAGATGCAGAGTGCGGAGTATCTCAAGCGGGAGCATATGC
CGTAA

Upstream 100 bases:

>100_bases
GAAGTGGAATCCCGACAGCATATCGCGTAGTGTAGAACGGCCTTTTTTTCGTCAGCCGTGAACGACGGCACATCGATTTT
CAAGGAATAACAATAACATT

Downstream 100 bases:

>100_bases
GCCGGACAAGCGTAGCGCTCCGGCATTATGCGGTATTATATCTGTGCAACCTCCCCGACCGAGGGTGAACTAGGCCTGAA
CAAAACCCGCGGCAAATCGC

Product: ATP/GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MQSLSPTSRYLQALNEGTHQPDDVQKEAVDRLETLYQALTAKKSSATPPGGLIARLGKLLGKNEPDAQIPVRGLYMWGGV
GRGKTWLMDLFYHSLPGERKLRLHFHRFMLRVHEELTALQGQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLM
KALFARGITLVATSNIPPEELYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLTPLNDETRRQMDKLW
LALAGAAREHAPTLEINHRPLSTLGVENQTLAASFATLCVEARSQHDYIALSRLFHTVLLFDVPVMTPLMENEARRFIAL
VDEFYERHVKLVVSAAAPLYEIYQGERLKFEFQRCLSRLQEMQSAEYLKREHMP

Sequences:

>Translated_374_residues
MQSLSPTSRYLQALNEGTHQPDDVQKEAVDRLETLYQALTAKKSSATPPGGLIARLGKLLGKNEPDAQIPVRGLYMWGGV
GRGKTWLMDLFYHSLPGERKLRLHFHRFMLRVHEELTALQGQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLM
KALFARGITLVATSNIPPEELYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLTPLNDETRRQMDKLW
LALAGAAREHAPTLEINHRPLSTLGVENQTLAASFATLCVEARSQHDYIALSRLFHTVLLFDVPVMTPLMENEARRFIAL
VDEFYERHVKLVVSAAAPLYEIYQGERLKFEFQRCLSRLQEMQSAEYLKREHMP
>Mature_374_residues
MQSLSPTSRYLQALNEGTHQPDDVQKEAVDRLETLYQALTAKKSSATPPGGLIARLGKLLGKNEPDAQIPVRGLYMWGGV
GRGKTWLMDLFYHSLPGERKLRLHFHRFMLRVHEELTALQGQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLM
KALFARGITLVATSNIPPEELYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLTPLNDETRRQMDKLW
LALAGAAREHAPTLEINHRPLSTLGVENQTLAASFATLCVEARSQHDYIALSRLFHTVLLFDVPVMTPLMENEARRFIAL
VDEFYERHVKLVVSAAAPLYEIYQGERLKFEFQRCLSRLQEMQSAEYLKREHMP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=393, Percent_Identity=34.6055979643766, Blast_Score=221, Evalue=1e-57,
Organism=Escherichia coli, GI1789627, Length=373, Percent_Identity=84.9865951742627, Blast_Score=666, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17505769, Length=418, Percent_Identity=33.2535885167464, Blast_Score=237, Evalue=9e-63,
Organism=Saccharomyces cerevisiae, GI6320783, Length=406, Percent_Identity=30.0492610837438, Blast_Score=165, Evalue=1e-41,
Organism=Drosophila melanogaster, GI20129913, Length=425, Percent_Identity=32, Blast_Score=188, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42656; Mature: 42656

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLSPTSRYLQALNEGTHQPDDVQKEAVDRLETLYQALTAKKSSATPPGGLIARLGKLL
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
GKNEPDAQIPVRGLYMWGGVGRGKTWLMDLFYHSLPGERKLRLHFHRFMLRVHEELTALQ
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
GQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLMKALFARGITLVATSNIPPEE
CCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
LYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLTPLNDETRRQMDKLW
HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHEEEECCCHHHHHHHHHHH
LALAGAAREHAPTLEINHRPLSTLGVENQTLAASFATLCVEARSQHDYIALSRLFHTVLL
HHHHHHHHHCCCCEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FDVPVMTPLMENEARRFIALVDEFYERHVKLVVSAAAPLYEIYQGERLKFEFQRCLSRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EMQSAEYLKREHMP
HHHHHHHHHHCCCC
>Mature Secondary Structure
MQSLSPTSRYLQALNEGTHQPDDVQKEAVDRLETLYQALTAKKSSATPPGGLIARLGKLL
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
GKNEPDAQIPVRGLYMWGGVGRGKTWLMDLFYHSLPGERKLRLHFHRFMLRVHEELTALQ
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
GQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLMKALFARGITLVATSNIPPEE
CCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
LYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLTPLNDETRRQMDKLW
HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHEEEECCCHHHHHHHHHHH
LALAGAAREHAPTLEINHRPLSTLGVENQTLAASFATLCVEARSQHDYIALSRLFHTVLL
HHHHHHHHHCCCCEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FDVPVMTPLMENEARRFIALVDEFYERHVKLVVSAAAPLYEIYQGERLKFEFQRCLSRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EMQSAEYLKREHMP
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]