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The map label for this gene is codB [H]

Identifier: 29143584

GI number: 29143584

Start: 3341854

End: 3343107

Strand: Direct

Name: codB [H]

Synonym: t3250

Alternate gene names: 29143584

Gene position: 3341854-3343107 (Clockwise)

Preceding gene: 29143583

Following gene: 29143585

Centisome position: 69.74

GC content: 55.58

Gene sequence:

>1254_bases
GTGTCGCAGGACAACAATTATAGCCAGGGGCCAGTTCCCCAGGCGGCGCGGAAGGGCGTGATTCCACTGACGTTTGTCAT
GTTGGGTTTAACGTTTTTTTCCGCCAGTATGTGGACCGGAGGGACACTCGGCACCGGTCTTACCTATCATGATTTCTTCC
TCGCAGTTTTCTTCGGTAATCTCCTCCTCGGTATCTACACTGCATTTCTTGGCTACATCGGCGCAAAAACCGGACTCTCC
ACCCACCTCCTTGCACGTTACTCCTTTGGCGTTAAAGGCTCATGGCTTCCCTCGCTGCTGTTAGGCAGTACTCAAGTGGG
CTGGTTTGGCGTTGGCGTAGCGATGTTCGCTATTCCGGTCAGTAAAGCGACGGGCATTGATGCCAATATCCTGATTGCCG
TTTCGGGTCTGCTGATGACCCTGACCATTTTTTTCGGCATCTCGGCGTTGACCATTTTGTCTATCGTTGCCGTACCCGCG
ATCGTTATTCTGGGCAGCTACTCCGTCTGGCTGGCGGTCAGCGGCGTGGGTGGGCTGGAGCATTTAAAAACGATAGTGCC
GCAGACGCCGCTGGATTTTTCCAGCGCGCTGGCGCTGGTGGTGGGCTCGTTTGTCAGCGCCGGTACATTGACCGCCGACT
TCGTCCGCTTCGGACGTCATGCCAAAAGCGCCGTACTGATTGCGATGGTCGCTTTTTTCCTCGGTAACTCGCTGATGTTT
ATCTTCGGCGCGGCAGGCGCTGCCGCCGTCGGTCAGGCGGATATCTCTGACGTGATGATAGCGCAGGGGCTGCTGCTGCC
CGCGATTGTGGTGCTTGGCCTGAATATCTGGACCACCAACGATAACGCGCTGTACGCATCGGGTCTGGGCTTCGCCAATA
TTACCGGTCTTTCCAGCCGCACGCTGTCGGTGGTGAACGGGATTATCGGTACCGTGTGCGCGCTGTGGCTTTACAATAAT
TTTGTCGGCTGGCTGACGTTCCTGTCATCTGCCATCCCACCGATTGGTGGAGTGATTATTGCCGACTATCTGGTGAACCG
CCGCCGCTATGCCGACTTCAACACCGTGCGCTTTATTCCCGTTAACTGGATTGCTATTCTTTCCGTCGCGCTGGGCATCG
CCGCCGGACATTATGTTCCTGGTATTGTGCCCGTCAACGCCGTACTCGGCGGCGTCTTCAGCTATATCCTGCTGAATCCA
CTTTTCAACCGCAGCCTTGCTAAATCACCAGAGGTCAGCCATGCAGAACAATAA

Upstream 100 bases:

>100_bases
TGAATAATTATCAAAAAAAATATCACACGAAAACGTTTGCTTTATTCTGAGAACTGTATATTATGCGGCGGATTTTTTGG
GCAAAATTCATGGAGGCGTT

Downstream 100 bases:

>100_bases
CATCACTATTCGTCAGACGCGTCTGCAGGGACACGAAGGATTATGGCAGATTACGATTGAAAACGGGCGCTTTAGCCGGA
TTGAGCCTCAGGAAGCCACA

Product: cytosine permease

Products: Proton [Cytoplasm]; cytosine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MSQDNNYSQGPVPQAARKGVIPLTFVMLGLTFFSASMWTGGTLGTGLTYHDFFLAVFFGNLLLGIYTAFLGYIGAKTGLS
THLLARYSFGVKGSWLPSLLLGSTQVGWFGVGVAMFAIPVSKATGIDANILIAVSGLLMTLTIFFGISALTILSIVAVPA
IVILGSYSVWLAVSGVGGLEHLKTIVPQTPLDFSSALALVVGSFVSAGTLTADFVRFGRHAKSAVLIAMVAFFLGNSLMF
IFGAAGAAAVGQADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGLSSRTLSVVNGIIGTVCALWLYNN
FVGWLTFLSSAIPPIGGVIIADYLVNRRRYADFNTVRFIPVNWIAILSVALGIAAGHYVPGIVPVNAVLGGVFSYILLNP
LFNRSLAKSPEVSHAEQ

Sequences:

>Translated_417_residues
MSQDNNYSQGPVPQAARKGVIPLTFVMLGLTFFSASMWTGGTLGTGLTYHDFFLAVFFGNLLLGIYTAFLGYIGAKTGLS
THLLARYSFGVKGSWLPSLLLGSTQVGWFGVGVAMFAIPVSKATGIDANILIAVSGLLMTLTIFFGISALTILSIVAVPA
IVILGSYSVWLAVSGVGGLEHLKTIVPQTPLDFSSALALVVGSFVSAGTLTADFVRFGRHAKSAVLIAMVAFFLGNSLMF
IFGAAGAAAVGQADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGLSSRTLSVVNGIIGTVCALWLYNN
FVGWLTFLSSAIPPIGGVIIADYLVNRRRYADFNTVRFIPVNWIAILSVALGIAAGHYVPGIVPVNAVLGGVFSYILLNP
LFNRSLAKSPEVSHAEQ
>Mature_416_residues
SQDNNYSQGPVPQAARKGVIPLTFVMLGLTFFSASMWTGGTLGTGLTYHDFFLAVFFGNLLLGIYTAFLGYIGAKTGLST
HLLARYSFGVKGSWLPSLLLGSTQVGWFGVGVAMFAIPVSKATGIDANILIAVSGLLMTLTIFFGISALTILSIVAVPAI
VILGSYSVWLAVSGVGGLEHLKTIVPQTPLDFSSALALVVGSFVSAGTLTADFVRFGRHAKSAVLIAMVAFFLGNSLMFI
FGAAGAAAVGQADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGLSSRTLSVVNGIIGTVCALWLYNNF
VGWLTFLSSAIPPIGGVIIADYLVNRRRYADFNTVRFIPVNWIAILSVALGIAAGHYVPGIVPVNAVLGGVFSYILLNPL
FNRSLAKSPEVSHAEQ

Specific function: Required for cytosine transport into the cell [H]

COG id: COG1457

COG function: function code F; Purine-cytosine permease and related proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the purine-cytosine permease family [H]

Homologues:

Organism=Escherichia coli, GI1786530, Length=416, Percent_Identity=82.6923076923077, Blast_Score=671, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001248
- InterPro:   IPR012681 [H]

Pfam domain/function: PF02133 Transp_cyt_pur [H]

EC number: NA

Molecular weight: Translated: 43754; Mature: 43623

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDNNYSQGPVPQAARKGVIPLTFVMLGLTFFSASMWTGGTLGTGLTYHDFFLAVFFGN
CCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LLLGIYTAFLGYIGAKTGLSTHLLARYSFGVKGSWLPSLLLGSTQVGWFGVGVAMFAIPV
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH
SKATGIDANILIAVSGLLMTLTIFFGISALTILSIVAVPAIVILGSYSVWLAVSGVGGLE
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
HLKTIVPQTPLDFSSALALVVGSFVSAGTLTADFVRFGRHAKSAVLIAMVAFFLGNSLMF
HHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
IFGAAGAAAVGQADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGLSSR
EEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCHHCCCCCHH
TLSVVNGIIGTVCALWLYNNFVGWLTFLSSAIPPIGGVIIADYLVNRRRYADFNTVRFIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEH
VNWIAILSVALGIAAGHYVPGIVPVNAVLGGVFSYILLNPLFNRSLAKSPEVSHAEQ
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SQDNNYSQGPVPQAARKGVIPLTFVMLGLTFFSASMWTGGTLGTGLTYHDFFLAVFFGN
CCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LLLGIYTAFLGYIGAKTGLSTHLLARYSFGVKGSWLPSLLLGSTQVGWFGVGVAMFAIPV
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH
SKATGIDANILIAVSGLLMTLTIFFGISALTILSIVAVPAIVILGSYSVWLAVSGVGGLE
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
HLKTIVPQTPLDFSSALALVVGSFVSAGTLTADFVRFGRHAKSAVLIAMVAFFLGNSLMF
HHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
IFGAAGAAAVGQADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGLSSR
EEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCHHCCCCCHH
TLSVVNGIIGTVCALWLYNNFVGWLTFLSSAIPPIGGVIIADYLVNRRRYADFNTVRFIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEH
VNWIAILSVALGIAAGHYVPGIVPVNAVLGGVFSYILLNPLFNRSLAKSPEVSHAEQ
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; cytosine [Periplasm] [C]

Specific reaction: Proton [Periplasm] + cytosine [Periplasm] = Proton [Cytoplasm] + cytosine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]