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The map label for this gene is ygiD [H]

Identifier: 29143451

GI number: 29143451

Start: 3195154

End: 3195984

Strand: Reverse

Name: ygiD [H]

Synonym: t3110

Alternate gene names: 29143451

Gene position: 3195984-3195154 (Counterclockwise)

Preceding gene: 29143456

Following gene: 29143447

Centisome position: 66.69

GC content: 55.48

Gene sequence:

>831_bases
ATGGTGATGTTAACAAAATGTCTTTCCTGTAAGGATAACATCATGTCTTTAACGTGTATGCCAGCATTGTTTTTGGGGCA
TGGCAGCCCGATGAACGTGCTGGACGATAATGATTATACCCGCGCCTGGCGGCGATTGGGGGAAGCCCTACCGCGACCAC
AGGCGATAGTGGTGGTGTCGGCGCACTGGTATACCCGTGGGACGGGCGTCACAGCGATGGAAAGGCCGCAAACTCTCCAC
GATTTTGGCGGTTTTCCGCAGGCGCTGTATGACATGCATTATCCGGCCCCTGGATCGCCTGCGCTGGCGCAGCGTCTGGT
TGAACTGTTGGCTCCCGTTCCCGTCGCGCTCGATAAAGAGGCGTGGGGATTTGATCACGGCTCCTGGGGCGTATTGATCA
AGATGTACCCGAATGCGGATATCCCGATGGTGCAGCTTAGTGTTGATAGTACCAAACCGGCGGCATGGCATTTTGAGATG
GGTCGTAAACTGGCGACGCTGCGTGACGAAGGCGTGATGCTGGTGGCTAGCGGGAATGTGGTTCATAACCTGCGGACTGT
GCGTTGGCACGGTGACAATATACCGTATCCCTGGGCGGCGTCATTTAATGACTTTGTGAAAGCTAACCTGACGTGGCAGG
GGCCGGTAGAACAGCACCCGCTGGTGAATTATCTGCAACATGAAGGGGGCGCCTTATCGAACCCGACGCCGGAGCACTTT
TTGCCTTTGCTGTATGTACTTGGCGCCTGGGACGGCAAGGAACCTATCACCATCCCGGTCGACGGTATTGAGATGGGCAG
TATAAGTATGTTGTCGGTGCAGGTGGGGTAG

Upstream 100 bases:

>100_bases
ATCCATTACTCCTTATCAATTTGCCGTCCGAACCTGACCTTCAAAATAACTGATGATCTTCATCATAGTTATCTGAGTTC
TTCCTCTGTGAAGAAAGCGT

Downstream 100 bases:

>100_bases
GCCGGATAAGGCGCTGAATGATTGCCCGATGGCGCTACGCGCATCGGGCTTACAGGAAAATCTATCCTTCGACAAAAATA
TGCGGATAGAAGCGGGAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MVMLTKCLSCKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLH
DFGGFPQALYDMHYPAPGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEM
GRKLATLRDEGVMLVASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHF
LPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG

Sequences:

>Translated_276_residues
MVMLTKCLSCKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLH
DFGGFPQALYDMHYPAPGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEM
GRKLATLRDEGVMLVASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHF
LPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG
>Mature_276_residues
MVMLTKCLSCKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLH
DFGGFPQALYDMHYPAPGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEM
GRKLATLRDEGVMLVASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHF
LPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=87.0229007633588, Blast_Score=484, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 30506; Mature: 30506

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMLTKCLSCKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVS
CEEEEEHHCCCCCCEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
AHWYTRGTGVTAMERPQTLHDFGGFPQALYDMHYPAPGSPALAQRLVELLAPVPVALDKE
EEEEECCCCCCHHCCCCHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCC
AWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEMGRKLATLRDEGVMLVASGNV
CCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCEEEHHHCCEEEEECCCCEEEEECCCE
VHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHF
EEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHH
LPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG
HHHHHHHHCCCCCCCEEEEECCCEECCEEEEEEEEC
>Mature Secondary Structure
MVMLTKCLSCKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVS
CEEEEEHHCCCCCCEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
AHWYTRGTGVTAMERPQTLHDFGGFPQALYDMHYPAPGSPALAQRLVELLAPVPVALDKE
EEEEECCCCCCHHCCCCHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCC
AWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEMGRKLATLRDEGVMLVASGNV
CCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCEEEHHHCCEEEEECCCCEEEEECCCE
VHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHF
EEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHH
LPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG
HHHHHHHHCCCCCCCEEEEECCCEECCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]