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The map label for this gene is yggW [H]

Identifier: 29143366

GI number: 29143366

Start: 3104293

End: 3105429

Strand: Direct

Name: yggW [H]

Synonym: t3016

Alternate gene names: 29143366

Gene position: 3104293-3105429 (Clockwise)

Preceding gene: 29143365

Following gene: 29143369

Centisome position: 64.78

GC content: 54.71

Gene sequence:

>1137_bases
ATGGCTAAACTACCGCCGCTCAGTCTTTATATTCATATTCCCTGGTGTGTACAAAAATGTCCATATTGCGACTTCAATTC
CCATGCGTTGAAGGGCGAGGTGCCGCATGACGACTACGTCCAGCATCTGTTAAGCGATCTGGATGCCGACGTCGCTTGGG
CGCAAGGGCGTGAAGTAAAGACCATTTTTATTGGCGGCGGTACGCCAAGCCTGCTTTCCGGGCCGGCGATGCAAACGCTG
CTGGACGGCGTGCGTGCGCGCCTGAATCTGGCGGCGGATGCGGAAATTACCATGGAAGCGAACCCCGGCACGGTCGAAGC
CGACCGCTTCATCGACTATCAGCGCGCCGGCGTAAACCGGATCTCCATTGGCGTGCAGAGCTTTAGTGAGCCTAAGCTGA
AACGTCTTGGCCGTATTCACGGTCCACAAGAGGCGATGCGGGCAGCAAGACTGGCAAATGGGCTTGGGCTACGCAGCTTT
AACCTCGACTTGATGCATGGATTGCCGGATCAAACGCTGGAAGAGGCGCTGAATGATTTGCGACAGGCGATTGCGCTTAA
TCCGCCGCATCTCTCATGGTATCAATTGACGATTGAACCCAACACTTTGTTCGGTTCGCGTCCGCCGGTTTTACCGGACG
ATGACGCGCTGTGGGATATCTTTGAGCAGGGCCACCAGTTATTAACCGCCGCGGGCTATCAGCAATACGAAACGTCGGCC
TATGCCAAACCCGGTTATCAGTGCCAGCATAATCTGAACTACTGGCGCTTTGGCGACTATCTGGGTATTGGCTGCGGCGC
CCACGGTAAAGTCACCTTCCCGGACGGCAGGATCTTGCGCACCACCAAAACCCGTCACCCACGCGGTTATATGCAGGGAC
GTTACCTGGAAAGCCAGCGTGACGTGAGTGATGACGATAAACCCTTTGAGTTCTTTATGAACCGTTTTCGGTTGCTGGAG
CGCGCGCCTCGCGCCGAATTTGTCGACTACACCGGGCTTACGGAAGCGGTTATTCGTCAGCCAATCGACGAGGCTATTGC
CCAGGGCTACCTGACAGAATGCGAGCAATACTGGCAGATTACCCGTCACGGTAAACTGTTTTTAAACTCTCTTCTTGAGT
TGTTTCTCGCGGAATAA

Upstream 100 bases:

>100_bases
CCGTCTGAAGGCAAAACCGCCGCAGAACTGACCCGTGAAGAAAAAAGCGCGATTTCCCACCGTGGACAAGCGCTCAAGCT
GCTGCTGGATGCGTTACGCA

Downstream 100 bases:

>100_bases
CAAGGATAAGCCTGTCGCGCCAGCGGGTAAAATACCTGATGGCGCGACGCTTACCGACCTGTGGCGGTTAATGCGCCACC
AGCAAGCGCATTATTTAATA

Product: coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MAKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIGGGTPSLLSGPAMQTL
LDGVRARLNLAADAEITMEANPGTVEADRFIDYQRAGVNRISIGVQSFSEPKLKRLGRIHGPQEAMRAARLANGLGLRSF
NLDLMHGLPDQTLEEALNDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSA
YAKPGYQCQHNLNYWRFGDYLGIGCGAHGKVTFPDGRILRTTKTRHPRGYMQGRYLESQRDVSDDDKPFEFFMNRFRLLE
RAPRAEFVDYTGLTEAVIRQPIDEAIAQGYLTECEQYWQITRHGKLFLNSLLELFLAE

Sequences:

>Translated_378_residues
MAKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIGGGTPSLLSGPAMQTL
LDGVRARLNLAADAEITMEANPGTVEADRFIDYQRAGVNRISIGVQSFSEPKLKRLGRIHGPQEAMRAARLANGLGLRSF
NLDLMHGLPDQTLEEALNDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSA
YAKPGYQCQHNLNYWRFGDYLGIGCGAHGKVTFPDGRILRTTKTRHPRGYMQGRYLESQRDVSDDDKPFEFFMNRFRLLE
RAPRAEFVDYTGLTEAVIRQPIDEAIAQGYLTECEQYWQITRHGKLFLNSLLELFLAE
>Mature_377_residues
AKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVKTIFIGGGTPSLLSGPAMQTLL
DGVRARLNLAADAEITMEANPGTVEADRFIDYQRAGVNRISIGVQSFSEPKLKRLGRIHGPQEAMRAARLANGLGLRSFN
LDLMHGLPDQTLEEALNDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY
AKPGYQCQHNLNYWRFGDYLGIGCGAHGKVTFPDGRILRTTKTRHPRGYMQGRYLESQRDVSDDDKPFEFFMNRFRLLER
APRAEFVDYTGLTEAVIRQPIDEAIAQGYLTECEQYWQITRHGKLFLNSLLELFLAE

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=284, Percent_Identity=35.9154929577465, Blast_Score=174, Evalue=2e-43,
Organism=Escherichia coli, GI1789325, Length=378, Percent_Identity=92.0634920634921, Blast_Score=726, Evalue=0.0,
Organism=Escherichia coli, GI87082341, Length=251, Percent_Identity=32.2709163346614, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 42751; Mature: 42620

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVK
CCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEE
TIFIGGGTPSLLSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDYQRAGVNR
EEEECCCCCHHHCCHHHHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHCCCCE
ISIGVQSFSEPKLKRLGRIHGPQEAMRAARLANGLGLRSFNLDLMHGLPDQTLEEALNDL
EEECHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECHHHHHCCCHHHHHHHHHHH
RQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSA
HHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
YAKPGYQCQHNLNYWRFGDYLGIGCGAHGKVTFPDGRILRTTKTRHPRGYMQGRYLESQR
CCCCCCCCCCCCCEEEECCEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCEECCCC
DVSDDDKPFEFFMNRFRLLERAPRAEFVDYTGLTEAVIRQPIDEAIAQGYLTECEQYWQI
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
TRHGKLFLNSLLELFLAE
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDADVAWAQGREVK
CCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEE
TIFIGGGTPSLLSGPAMQTLLDGVRARLNLAADAEITMEANPGTVEADRFIDYQRAGVNR
EEEECCCCCHHHCCHHHHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHCCCCE
ISIGVQSFSEPKLKRLGRIHGPQEAMRAARLANGLGLRSFNLDLMHGLPDQTLEEALNDL
EEECHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECHHHHHCCCHHHHHHHHHHH
RQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSA
HHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
YAKPGYQCQHNLNYWRFGDYLGIGCGAHGKVTFPDGRILRTTKTRHPRGYMQGRYLESQR
CCCCCCCCCCCCCEEEECCEEEECCCCCCEEECCCCCEEEECCCCCCCCCCCCCEECCCC
DVSDDDKPFEFFMNRFRLLERAPRAEFVDYTGLTEAVIRQPIDEAIAQGYLTECEQYWQI
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
TRHGKLFLNSLLELFLAE
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]