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The map label for this gene is ppdB [H]

Identifier: 29143259

GI number: 29143259

Start: 2998240

End: 2998803

Strand: Reverse

Name: ppdB [H]

Synonym: t2907

Alternate gene names: 29143259

Gene position: 2998803-2998240 (Counterclockwise)

Preceding gene: 29143260

Following gene: 29143258

Centisome position: 62.58

GC content: 53.55

Gene sequence:

>564_bases
GTGTCAATAACCACGCGGGGGTTCTCGCTACTGGAGGTTGTGCTGGCGATGGCGATAGGTTCCATTTTACTGCTTGGGTC
CGCACGATTTTTACCGGCGTTACAGCGTGAGATCTGGCACAACACGCGACAGTTATCGCTGGAAGATGAAATCTGGCAGC
GAACCTATACCGTAGCGAAGCATCTTCAACGTGCGGGTTACTGTCATGGCCACTGTATCGGCGAAGGGCTACATCTTGCC
GAACAGGGGCAATGCGTCATCGTTCAGTGGGACGGGAATAATAACGGGGTCTGGGATACCATACCGGCGAAAGAGGCCGA
CCAGACCGGGTTCCGTATGAAGGATAACGTTCTGGAGACATTACGCGGAGCAACATCTTGCCAGGGTAAGGGATGGGAAA
AAATGACCGATCCCAATACGGTACTCATCACGGCGTTTAACGTTGAGCGCCGGGATATAACGGGATTCTCGCCAGTGCTC
ATGCTGCATCTGCGTGGCGCCAGCAAAGCCGAGCCTCAGACGGTTATTGACGCGCAATATAGCGTAACGGGATTTAATCT
GTGA

Upstream 100 bases:

>100_bases
GGGCAGGGCACATCGTGCTGAAAAACGCTGCCGGAGAGTGGCGTCTGGTCGTCTCCTCCTGGGGGCGAATCAGGCTATGT
GAGCGTAACGAGGCCGCCAC

Downstream 100 bases:

>100_bases
ATCGGGAACGTGGCGCTTCTTCGCTAATACTGGCGCTTTTAATACTGATTCTGGGCAGTCTGCTACTGCAAGGCGTAAAT
CAGCAGCAGGCCAGCTATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSITTRGFSLLEVVLAMAIGSILLLGSARFLPALQREIWHNTRQLSLEDEIWQRTYTVAKHLQRAGYCHGHCIGEGLHLA
EQGQCVIVQWDGNNNGVWDTIPAKEADQTGFRMKDNVLETLRGATSCQGKGWEKMTDPNTVLITAFNVERRDITGFSPVL
MLHLRGASKAEPQTVIDAQYSVTGFNL

Sequences:

>Translated_187_residues
MSITTRGFSLLEVVLAMAIGSILLLGSARFLPALQREIWHNTRQLSLEDEIWQRTYTVAKHLQRAGYCHGHCIGEGLHLA
EQGQCVIVQWDGNNNGVWDTIPAKEADQTGFRMKDNVLETLRGATSCQGKGWEKMTDPNTVLITAFNVERRDITGFSPVL
MLHLRGASKAEPQTVIDAQYSVTGFNL
>Mature_186_residues
SITTRGFSLLEVVLAMAIGSILLLGSARFLPALQREIWHNTRQLSLEDEIWQRTYTVAKHLQRAGYCHGHCIGEGLHLAE
QGQCVIVQWDGNNNGVWDTIPAKEADQTGFRMKDNVLETLRGATSCQGKGWEKMTDPNTVLITAFNVERRDITGFSPVLM
LHLRGASKAEPQTVIDAQYSVTGFNL

Specific function: Not yet known [H]

COG id: COG4795

COG function: function code U; Type II secretory pathway, component PulJ

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789189, Length=187, Percent_Identity=67.379679144385, Blast_Score=283, Evalue=5e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR016419
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 20812; Mature: 20681

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITTRGFSLLEVVLAMAIGSILLLGSARFLPALQREIWHNTRQLSLEDEIWQRTYTVAK
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HLQRAGYCHGHCIGEGLHLAEQGQCVIVQWDGNNNGVWDTIPAKEADQTGFRMKDNVLET
HHHHCCCCCCEECCCCCEECCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCHHHHHHH
LRGATSCQGKGWEKMTDPNTVLITAFNVERRDITGFSPVLMLHLRGASKAEPQTVIDAQY
HHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEECEE
SVTGFNL
EEEECCC
>Mature Secondary Structure 
SITTRGFSLLEVVLAMAIGSILLLGSARFLPALQREIWHNTRQLSLEDEIWQRTYTVAK
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HLQRAGYCHGHCIGEGLHLAEQGQCVIVQWDGNNNGVWDTIPAKEADQTGFRMKDNVLET
HHHHCCCCCCEECCCCCEECCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCHHHHHHH
LRGATSCQGKGWEKMTDPNTVLITAFNVERRDITGFSPVLMLHLRGASKAEPQTVIDAQY
HHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEECEE
SVTGFNL
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814 [H]