| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
Click here to switch to the map view.
The map label for this gene is ygcZ [H]
Identifier: 29143225
GI number: 29143225
Start: 2954671
End: 2956029
Strand: Reverse
Name: ygcZ [H]
Synonym: t2871
Alternate gene names: 29143225
Gene position: 2956029-2954671 (Counterclockwise)
Preceding gene: 29143226
Following gene: 29143224
Centisome position: 61.69
GC content: 51.8
Gene sequence:
>1359_bases ATGAGTTCATTAAGTCACGCGGCGAGCAGTGCGGAGAAACGCACGAACGCCCGCTACTGGATAGTGGTGATGCTGTTTAT CGTCACATCCTTCAACTACGGCGACCGCGCCACATTGTCCATTGCCGGCTCAGAAATGGCCAAAGATATCGGCCTTGATC CGGTAGGTATGGGCTATGTTTTTTCTGCTTTTTCATGGGCCTATGTTATCGGGCAGATCCCGGGCGGCTGGCTGCTGGAC CGCTTTGGTTCCAAACGCGTCTATTTCTGGTCTATTTTCATTTGGTCAGTCTTCACCCTGTTGCAGGGTTTTGTCGATAT CTTTAGTGGTTTCGGCATTATTGTCGCCCTCTTTACGCTTCGTTTCCTGGTCGGTCTGGCGGAATCGCCTTCTTTCCCGG GCAACAGTCGCATCGTTGCGGCCTGGTTCCCGGCGCAGGAGAGGGGAACGGCGGTGGCCATCTTTAACTCCGCGCAATAC TTTGCCACGGTTATTTTCGCGCCGATTATGGGCTGGCTGACGCACGAAGTGGGCTGGTCGCATGTCTTCTTCTTTATGGG CGGGTTAGGGATCATCATCAGCTTTATCTGGTTGAAAGTTATCCATGAACCAAATAACCATCCGGGCGTAAATAAGAAAG AATTGGAGTACATCGCAGAAGGCGGCGCGCTGATCAATATGGATCAGAAAGACACCAAAGCGAAAGTACCGTTTAGCGTC AAATGGGGCCAGATCAAACAGCTGCTGGGCTCTCGTATGATGATTGGCGTTTACATCGGTCAGTACTGTATTAACGCATT GACCTATTTCTTTATTACCTGGTTCCCGGTCTATTTGGTCCAGGCGCGCGGCATGTCGATTCTCAAAGCGGGCTTTGTCG CCTCGGTTCCTGCAGTCTGCGGCTTTATCGGCGGCGTGTTGGGCGGCATCATTTCCGACTGGCTGATGCGTCGTACTGGC TTCCTGAATATCGCGCGCAAGACGCCGATTGTGCTGGGAATGTTGCTGTCAATGGTTATGGTGTTCTGTAACTATGTGAA CGTGGAATGGATGATCATCGGCTTTATGGTGTTGGCCTTCTTCGGTAAAGGTATTGGCGCGTTGGGCTGGGCAGTAATGG CGGATACCGCCCCGAAAGAGATCAGCGGTCTTTCCGGCGGCTTGTTTAATATGTTCGGCAATATTTCCGGTATTGTGACG CCAATCGCGATTGGTTACATCGTTGGCACCACCGGTTCCTTCAACGGCGCGTTGATCTATGTCGGCGTACATGCCCTGGT GGCCATCATCAGCTATCTGGTGCTGGTAGGCGATATTAAGCGTATTGAACTGAAACCTGTCGCAGGACAATTATCATGA
Upstream 100 bases:
>100_bases ACCTAATAAAAGCTGCAACAAGGAAACGTTATCTCTGATTCCCTACCGGTTGTGCAGTTCAGAGTGAGCGTAGCTAACGC GAAATTTCAGGAGTGCAACA
Downstream 100 bases:
>100_bases CAACGCAATCCAGTCCCGTTATTACGGACATGAAGGTCATTCCGGTTGCCGGACATGACAGTATGCTACTCAACATCGGC GGCGCGCATAACGCGTACTT
Product: glucarate transporter
Products: NA
Alternate protein names: D-glucarate permease [H]
Number of amino acids: Translated: 452; Mature: 451
Protein sequence:
>452_residues MSSLSHAASSAEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLD RFGSKRVYFWSIFIWSVFTLLQGFVDIFSGFGIIVALFTLRFLVGLAESPSFPGNSRIVAAWFPAQERGTAVAIFNSAQY FATVIFAPIMGWLTHEVGWSHVFFFMGGLGIIISFIWLKVIHEPNNHPGVNKKELEYIAEGGALINMDQKDTKAKVPFSV KWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTG FLNIARKTPIVLGMLLSMVMVFCNYVNVEWMIIGFMVLAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVT PIAIGYIVGTTGSFNGALIYVGVHALVAIISYLVLVGDIKRIELKPVAGQLS
Sequences:
>Translated_452_residues MSSLSHAASSAEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLD RFGSKRVYFWSIFIWSVFTLLQGFVDIFSGFGIIVALFTLRFLVGLAESPSFPGNSRIVAAWFPAQERGTAVAIFNSAQY FATVIFAPIMGWLTHEVGWSHVFFFMGGLGIIISFIWLKVIHEPNNHPGVNKKELEYIAEGGALINMDQKDTKAKVPFSV KWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTG FLNIARKTPIVLGMLLSMVMVFCNYVNVEWMIIGFMVLAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVT PIAIGYIVGTTGSFNGALIYVGVHALVAIISYLVLVGDIKRIELKPVAGQLS >Mature_451_residues SSLSHAASSAEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDR FGSKRVYFWSIFIWSVFTLLQGFVDIFSGFGIIVALFTLRFLVGLAESPSFPGNSRIVAAWFPAQERGTAVAIFNSAQYF ATVIFAPIMGWLTHEVGWSHVFFFMGGLGIIISFIWLKVIHEPNNHPGVNKKELEYIAEGGALINMDQKDTKAKVPFSVK WGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGF LNIARKTPIVLGMLLSMVMVFCNYVNVEWMIIGFMVLAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTP IAIGYIVGTTGSFNGALIYVGVHALVAIISYLVLVGDIKRIELKPVAGQLS
Specific function: Uptake of D-glucarate [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Homo sapiens, GI9966811, Length=411, Percent_Identity=28.2238442822384, Blast_Score=128, Evalue=9e-30, Organism=Homo sapiens, GI21322234, Length=413, Percent_Identity=26.3922518159806, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI9945322, Length=409, Percent_Identity=28.1173594132029, Blast_Score=126, Evalue=3e-29, Organism=Homo sapiens, GI4885441, Length=379, Percent_Identity=26.3852242744063, Blast_Score=115, Evalue=8e-26, Organism=Homo sapiens, GI6912666, Length=371, Percent_Identity=25.6064690026954, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI148743791, Length=370, Percent_Identity=24.8648648648649, Blast_Score=112, Evalue=9e-25, Organism=Homo sapiens, GI5031955, Length=269, Percent_Identity=25.2788104089219, Blast_Score=99, Evalue=9e-21, Organism=Homo sapiens, GI256219598, Length=379, Percent_Identity=24.0105540897098, Blast_Score=93, Evalue=5e-19, Organism=Homo sapiens, GI4503847, Length=379, Percent_Identity=24.0105540897098, Blast_Score=93, Evalue=5e-19, Organism=Homo sapiens, GI256219483, Length=379, Percent_Identity=24.0105540897098, Blast_Score=93, Evalue=5e-19, Organism=Homo sapiens, GI154350196, Length=427, Percent_Identity=22.4824355971897, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI223718438, Length=232, Percent_Identity=27.1551724137931, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI148728191, Length=306, Percent_Identity=23.5294117647059, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI256219543, Length=401, Percent_Identity=22.9426433915212, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI256219564, Length=309, Percent_Identity=23.6245954692557, Blast_Score=74, Evalue=4e-13, Organism=Escherichia coli, GI1789152, Length=450, Percent_Identity=96.2222222222222, Blast_Score=874, Evalue=0.0, Organism=Escherichia coli, GI1789515, Length=437, Percent_Identity=57.20823798627, Blast_Score=540, Evalue=1e-155, Organism=Escherichia coli, GI87082320, Length=435, Percent_Identity=42.2988505747126, Blast_Score=355, Evalue=3e-99, Organism=Escherichia coli, GI2367379, Length=419, Percent_Identity=27.2076372315036, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI2367193, Length=349, Percent_Identity=24.9283667621776, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788573, Length=455, Percent_Identity=21.978021978022, Blast_Score=72, Evalue=7e-14, Organism=Caenorhabditis elegans, GI115533554, Length=430, Percent_Identity=28.3720930232558, Blast_Score=139, Evalue=3e-33, Organism=Caenorhabditis elegans, GI115533556, Length=430, Percent_Identity=28.3720930232558, Blast_Score=139, Evalue=3e-33, Organism=Caenorhabditis elegans, GI17552542, Length=414, Percent_Identity=25.8454106280193, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17560030, Length=400, Percent_Identity=25, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71991448, Length=375, Percent_Identity=24.2666666666667, Blast_Score=93, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71991453, Length=375, Percent_Identity=24.2666666666667, Blast_Score=93, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17535049, Length=440, Percent_Identity=23.6363636363636, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193205400, Length=305, Percent_Identity=23.6065573770492, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17569727, Length=385, Percent_Identity=23.3766233766234, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI32565916, Length=256, Percent_Identity=23.828125, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI32565914, Length=256, Percent_Identity=23.828125, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17532009, Length=381, Percent_Identity=23.3595800524934, Blast_Score=79, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17554148, Length=355, Percent_Identity=23.6619718309859, Blast_Score=75, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17560966, Length=324, Percent_Identity=24.0740740740741, Blast_Score=72, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17509575, Length=268, Percent_Identity=26.4925373134328, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71997452, Length=409, Percent_Identity=20.2933985330073, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25145964, Length=286, Percent_Identity=21.6783216783217, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71989129, Length=263, Percent_Identity=25.4752851711027, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115534592, Length=226, Percent_Identity=25.6637168141593, Blast_Score=66, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193208223, Length=284, Percent_Identity=26.7605633802817, Blast_Score=66, Evalue=5e-11, Organism=Caenorhabditis elegans, GI32566049, Length=410, Percent_Identity=22.6829268292683, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24641682, Length=383, Percent_Identity=26.3707571801567, Blast_Score=125, Evalue=9e-29, Organism=Drosophila melanogaster, GI45550460, Length=416, Percent_Identity=25.9615384615385, Blast_Score=122, Evalue=6e-28, Organism=Drosophila melanogaster, GI24655255, Length=361, Percent_Identity=27.1468144044321, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI24639764, Length=426, Percent_Identity=23.4741784037559, Blast_Score=113, Evalue=3e-25, Organism=Drosophila melanogaster, GI24583789, Length=403, Percent_Identity=26.5508684863524, Blast_Score=113, Evalue=3e-25, Organism=Drosophila melanogaster, GI24654215, Length=448, Percent_Identity=24.7767857142857, Blast_Score=111, Evalue=9e-25, Organism=Drosophila melanogaster, GI19922400, Length=432, Percent_Identity=25, Blast_Score=111, Evalue=9e-25, Organism=Drosophila melanogaster, GI24648416, Length=461, Percent_Identity=24.295010845987, Blast_Score=106, Evalue=4e-23, Organism=Drosophila melanogaster, GI21356189, Length=461, Percent_Identity=24.295010845987, Blast_Score=106, Evalue=4e-23, Organism=Drosophila melanogaster, GI24655271, Length=411, Percent_Identity=25.0608272506083, Blast_Score=105, Evalue=6e-23, Organism=Drosophila melanogaster, GI20130135, Length=411, Percent_Identity=25.3041362530414, Blast_Score=105, Evalue=6e-23, Organism=Drosophila melanogaster, GI20130167, Length=424, Percent_Identity=26.6509433962264, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI24584153, Length=399, Percent_Identity=25.8145363408521, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI62484226, Length=405, Percent_Identity=25.679012345679, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI28573708, Length=432, Percent_Identity=22.9166666666667, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI28573707, Length=432, Percent_Identity=22.9166666666667, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24580790, Length=389, Percent_Identity=24.1645244215938, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI28573299, Length=408, Percent_Identity=24.7549019607843, Blast_Score=89, Evalue=7e-18, Organism=Drosophila melanogaster, GI20129235, Length=406, Percent_Identity=26.3546798029557, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24658674, Length=359, Percent_Identity=25.6267409470752, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI221474708, Length=161, Percent_Identity=32.9192546583851, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI24658666, Length=408, Percent_Identity=24.0196078431373, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24653727, Length=369, Percent_Identity=23.8482384823848, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI24658658, Length=409, Percent_Identity=22.2493887530562, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI45550495, Length=357, Percent_Identity=23.5294117647059, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI45550364, Length=435, Percent_Identity=23.448275862069, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI281361682, Length=361, Percent_Identity=21.606648199446, Blast_Score=66, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004744 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 49393; Mature: 49262
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSLSHAASSAEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYV CCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCCCCCCHHHH FSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSVFTLLQGFVDIFSGFGIIVALFTL HHHHHHHHHHHCCCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFLVGLAESPSFPGNSRIVAAWFPAQERGTAVAIFNSAQYFATVIFAPIMGWLTHEVGWS HHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHH HVFFFMGGLGIIISFIWLKVIHEPNNHPGVNKKELEYIAEGGALINMDQKDTKAKVPFSV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCEEE KWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVC CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH GFIGGVLGGIISDWLMRRTGFLNIARKTPIVLGMLLSMVMVFCNYVNVEWMIIGFMVLAF HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH FGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIY HHCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHCCCHHHHHHHHHHHHEECCCCCCCEEEE VGVHALVAIISYLVLVGDIKRIELKPVAGQLS HHHHHHHHHHHHHHHHCCHHEEEEECCCCCCC >Mature Secondary Structure SSLSHAASSAEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYV CCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCCCCCCHHHH FSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSVFTLLQGFVDIFSGFGIIVALFTL HHHHHHHHHHHCCCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFLVGLAESPSFPGNSRIVAAWFPAQERGTAVAIFNSAQYFATVIFAPIMGWLTHEVGWS HHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHH HVFFFMGGLGIIISFIWLKVIHEPNNHPGVNKKELEYIAEGGALINMDQKDTKAKVPFSV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCEEE KWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVC CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH GFIGGVLGGIISDWLMRRTGFLNIARKTPIVLGMLLSMVMVFCNYVNVEWMIIGFMVLAF HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH FGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIY HHCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHCCCHHHHHHHHHHHHEECCCCCCCEEEE VGVHALVAIISYLVLVGDIKRIELKPVAGQLS HHHHHHHHHHHHHHHHCCHHEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503; 9772162; 10762278 [H]