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The map label for this gene is ygcB [H]

Identifier: 29143200

GI number: 29143200

Start: 2918791

End: 2920998

Strand: Direct

Name: ygcB [H]

Synonym: t2845

Alternate gene names: 29143200

Gene position: 2918791-2920998 (Clockwise)

Preceding gene: 29143192

Following gene: 29143201

Centisome position: 60.91

GC content: 49.05

Gene sequence:

>2208_bases
ATGACACAGATAGAATATCTGGACTACCTCTGCTATTGGGGGAAAACAGATAAATCAACAGAAAACATAACCTGTAATTA
TCATTTACTGGCATACCATTGCCTGGACGTTGCTGCATGCGGGGAATACATAATAAAAAACAATACATTCAATTCATGTA
ATATATTAAAAGAATGTAATATCTCAGGTACAAATGCAGAAAACTGGATAATCTGGTTTCTTGCCAGCCACGATATCGGA
AAATTCGCCAGAGGATTTCAAAAATACGCCGAATTCCCAGACTCTCCCTTAGTCTCTCCCATTAGCGGTGTTTCCGCATT
TGAGAGACATGATTCCTTAGGCTTCTATTTATGGGGTAAATTATTTGAAGCGTGGAGTTCAGGTAGTAATGAAATTATCG
CAGGCATTGAACCAGAAAATCGCGCTAGGTTTGAAAGCGCTTTAAATAGCTGGATGCTTATTAGCACCGGGCACCATGGC
ATCCCGCCGGACACCATGAAAAATAGAAGCTCGCTGGCATTCACCGATGAAGACATTGTCGCAGCAACGCATTATCTGGA
AGCATTAAGTGAATTATTCCCTTTCACTCTACCTCAGGAATGGAAAACCAAAGCAGGGAGAAAATGTTTAAAACAGCACA
GTTGGTTTTTCGCTGGGCTTGTCACCCTCGCCGACTGGATGGGCTCGGATGAAAGCCAGTTTCCACTGCTCAGCAGCGCC
ATGCCATTGAAAGATTATTGGCCTCTCGCTTGTGAAAAAGCCCAACAGGCCATCCTCCGAATGCCGCCGTTATCTCAGCA
CAGCCATTATCAAGATCACCGGGCATTATTTCCGTTCATTCAGACGCTCACCCCTCTTCAGCAACGAGCAAGCGAACTGG
ATATTTCAGCACCCGGTGCACAGCTGGTTGTCCTGGAAGACGTTACCGGAGCAGGCAAAACAGAGGCCGCACTGATTCTG
ACTCACCGCTTAATGTCAGCCAATAAAGGCCACGGTCTCTACGTTGGGTTGCCGACAATGGCCACCGCAAACGCCATGTA
TCAGCGCCTGGCATCGGCTTATCATGCGCTATTTACCGATGAGTCCAGGCCATCGCTCATCCTGGCACACGGTGGGCGAG
AAATGTCGGACTCTTTCCGACAATCCATCTGGCAGCCAACAGAAAATATAGCTGAAGATTATGCCCGTGATGATGGCAAC
GCGACTACTGAGTGCCATACCTGGTTTGCAGATTCACGCAAAAAAGCGCTGCTGGCGGAAGTCGGCGTAGGTACGCTGGA
TCAACTCTTAATGGCGGTGATGCCTTTTCGCCATCAATCGCTCCGATTGCTAGGGATGCGCGACAAAATCCTGCTGCTGG
ATGAAGTGCACGCCTATGATGGTTATATGGTTAAATTGCTGGAAGGTTTATTGCGCTTCCATGCCGCCCAGGGCGGTAGC
GCTATTATTCTGAGCGCCACTCTTCCCGCCGCTTTACGGGAAAAATTACTTAATGCGTTTAGCGATGGCGCGGAATTTAT
GAGCGCTGGTGGTAGCGATAACGCGGGTTATCCATGGTTAAGCCACCTCACTTCCTCCGGTCTGTTAGAGCAACCACTGG
CCACACGTCCCGAAGTCCAAAGGACTGTAGCCGTTAATTGGATACAGCAGCGCCAGGAAGCACTGGACATTATTTATCGC
GTTGTGGCAACCGGACAGTGCATTTGTTGGATCCGCAACACGGTTGATGATGCGCTGGACACTTACCAGCAGTTGCTACA
CGAGGGAATCGTTCCAGAGCAGGATCTTTTGCTTTTCCACAGCCGTTTTGCTTTTATCGATCGTATTGCTATTGAAAATA
AAACGTTAAACTGGTTTGGTAACAATGCCCCCGTTTCTGAACGACGTGGTAAGGTATTAATCGCCACACAAGTCGTTGAA
CAAAGTCTCGATCTGGACTTTGACTGGATGATCACCGATCTGGCGCCGATTGATTTATTGATCCAGCGCGCCGGTCGCCT
GCAACGCCATATCCGCGATGCCCATGGGCAACGAAAATCTACGCTTCCGGATGAACGCCAGCCACCAGTATTGCATATTT
CTGGCCCCTCACTGGCAGGAGCAGGCAGAAGAGGGCTGGTTGGGGCAAGAGCTAAAAGGTACCGGCTTTGTTTACACCGA
TCATGCCTGCCTGTGGCGTACCCAGGCGCTGCTGCGTCAACATGGTGA

Upstream 100 bases:

>100_bases
CGCCAGTGGGGATAACCTAATCCAGACAAAAAAACTGGCCAATTACCCGTATCCCAATTTATTATCGATTTCATTGTAAT
CCCCCTCCTACAGAAAAAAG

Downstream 100 bases:

>100_bases
GATCCGTATGCCGGATAATGCCAGAGCACTCGTTGACGGCGTATACGAGCAGAAAATTGCTGCGCCAGCAGGCTTGCAGA
CGATCTCTGACGTTGCCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 735; Mature: 734

Protein sequence:

>735_residues
MTQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECNISGTNAENWIIWFLASHDIG
KFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHG
IPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSA
MPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALIL
THRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGN
ATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGS
AIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYR
VVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVE
QSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHISGPSLAGAGRRGLVGARAKRYRLCLHR
SCLPVAYPGAAASTW

Sequences:

>Translated_735_residues
MTQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECNISGTNAENWIIWFLASHDIG
KFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHG
IPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSA
MPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALIL
THRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGN
ATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGS
AIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYR
VVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVE
QSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHISGPSLAGAGRRGLVGARAKRYRLCLHR
SCLPVAYPGAAASTW
>Mature_734_residues
TQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECNISGTNAENWIIWFLASHDIGK
FARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGI
PPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAM
PLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILT
HRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNA
TTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSA
IILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRV
VATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQ
SLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHISGPSLAGAGRRGLVGARAKRYRLCLHRS
CLPVAYPGAAASTW

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=738, Percent_Identity=34.0108401084011, Blast_Score=290, Evalue=2e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006483
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 82177; Mature: 82046

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECN
CCCHHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHEECCCCCCCCHHHHCC
ISGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGK
CCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
LFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIV
HHHHHCCCCCCEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCHHHCCCCCEEECCCHHH
AATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCC
MPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGA
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTD
EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
ESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAE
CCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHH
VGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGS
HCCCHHHHHHHHHHCCCCCHHHEECCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCC
AIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQ
EEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHH
RTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFH
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLL
HHHHHHHHHHHCCCEEEECCCCCCCHHHCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHH
IQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHISGPSLAGAGRRGLVGARAKRYRLCLHR
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC
SCLPVAYPGAAASTW
CCCCEECCCCCCCCC
>Mature Secondary Structure 
TQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYIIKNNTFNSCNILKECN
CCHHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHEECCCCCCCCHHHHCC
ISGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPISGVSAFERHDSLGFYLWGK
CCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
LFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIV
HHHHHCCCCCCEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCHHHCCCCCEEECCCHHH
AATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCC
MPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGA
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTD
EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
ESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAE
CCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHH
VGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGS
HCCCHHHHHHHHHHCCCCCHHHEECCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCC
AIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQ
EEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHH
RTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFH
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLL
HHHHHHHHHHHCCCEEEECCCCCCCHHHCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHH
IQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHISGPSLAGAGRRGLVGARAKRYRLCLHR
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC
SCLPVAYPGAAASTW
CCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 2005873; 7984428 [H]