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The map label for this gene is nlpD [H]

Identifier: 29143181

GI number: 29143181

Start: 2901991

End: 2903112

Strand: Reverse

Name: nlpD [H]

Synonym: t2826

Alternate gene names: 29143181

Gene position: 2903112-2901991 (Counterclockwise)

Preceding gene: 29143182

Following gene: 29143180

Centisome position: 60.58

GC content: 52.14

Gene sequence:

>1122_bases
ATGAGCGCGGGAAGCCCAAAATTCACCGTTAGTCGCATTGCGGCACTATCACTGGTTTCACTATGGCTGGCAGGTTGTAC
CAGTTCGTCAAACCCTCCGGCGCCGGTCACGTCTGTGGACAGTGGGTCGTCATCAAATACCAATTCCGGGATGTTGATCA
CACCGCCGCCAAAAATGGGCGCGACGCCGCAACAAGCGCCGCAAATTCAACCCGTTCAGCGTCCTGTAACGCAGCCCATG
CAAACTCAACCGGTCACGGAACAACCCGTGCAGATGGAAAATGGGCGAATCGTATACAATCGCCAGTATGGGAATATTCC
GAAAGGTAGCTATACGGGCGGCAGTACTTACACCGTGAAAAAGGGTGATACGCTTTTTTACATCGCCTGGATTACCGGGA
ATGATTTCCGCGATCTGGCCCAGAGAAACAGTATTTCTGCCCCGTATAGCCTGAATGTAGGGCAAACTTTGCAAGTTGGT
AACGCATCCGGTACGCCAATTACTGGCGGAAATGCGATCACCCAGGCGGATGCAGCACAGCAAGGAGTTGTGACCAGGTC
TGCACAAAATTCCACCGTTGCAGTTGCGTCTCAACCAACAATTACGTATTCTGAGGGCTCAGGTGAACAAAGTGCTAACA
AAATGTTGCCAAACAACAAGCCTGCTGGGACGGTTGTCACAGCGCCTGTAACGGCACCAACGGTAAGCACGACCGAACCA
AATGCAAGCAGTACGTCAACCAGCGCGCCGATTTCCGCATGGCGCTGGCCGACGGATGGCAAAGTGATCGAAAACTTTGG
CGCTTCCGAAGGGGGCAATAAAGGGATCGACATTGCAGGCAGTAAGGGACAGGCTATCGTCGCAACCGCTGATGGGCGCG
TCGTATATGCCGGTAACGCACTGCGTGGTTACGGTAATCTTATTATCATCAAACATAACGATGATTACCTGAGTGCCTAC
GCCCATAATGATACGATGCTGGTCCGGGAACAACAGGAAGTTAAGGCGGGGCAAAAAATCGCTACTATGGGTAGCACCGG
CACCAGCTCTACACGCTTGCATTTTGAAATTCGTTACAAGGGGAAATCCGTAAACCCGCTGCGTTATTTACCGCAGCGAT
AA

Upstream 100 bases:

>100_bases
TGGGTTAAGCGTATCGTGAACACATTTTCCCGTGTTCACTTAATGCGTTGCACGGTTCTTACGTCACTGGTTGTTAACCA
AATTTTTTCCTGGGGGATAA

Downstream 100 bases:

>100_bases
AGCGGCGGAACCAGGCTTTGACTTGCTAGTTCCGTCAAGGGATCACGGGTAGGAGCCACCTTATGAGTCAGAATACGCTG
AAAGTTCATGATTTAAATGA

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMGATPQQAPQIQPVQRPVTQPM
QTQPVTEQPVQMENGRIVYNRQYGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVG
NASGTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEGSGEQSANKMLPNNKPAGTVVTAPVTAPTVSTTEP
NASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAY
AHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR

Sequences:

>Translated_373_residues
MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMGATPQQAPQIQPVQRPVTQPM
QTQPVTEQPVQMENGRIVYNRQYGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVG
NASGTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEGSGEQSANKMLPNNKPAGTVVTAPVTAPTVSTTEP
NASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAY
AHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR
>Mature_372_residues
SAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMGATPQQAPQIQPVQRPVTQPMQ
TQPVTEQPVQMENGRIVYNRQYGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVGN
ASGTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEGSGEQSANKMLPNNKPAGTVVTAPVTAPTVSTTEPN
ASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYA
HNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=380, Percent_Identity=84.4736842105263, Blast_Score=573, Evalue=1e-165,
Organism=Escherichia coli, GI87082174, Length=265, Percent_Identity=43.3962264150943, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI87082297, Length=138, Percent_Identity=36.231884057971, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 39183; Mature: 39052

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCC
ATPQQAPQIQPVQRPVTQPMQTQPVTEQPVQMENGRIVYNRQYGNIPKGSYTGGSTYTVK
CCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCEEEEE
KGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVGNASGTPITGGNAITQADAAQ
CCCEEEEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCEECCCCCEECCHHHH
QGVVTRSAQNSTVAVASQPTITYSEGSGEQSANKMLPNNKPAGTVVTAPVTAPTVSTTEP
CCCEEECCCCCEEEEECCCEEEECCCCCCHHHHHCCCCCCCCCEEEECCCCCCEECCCCC
NASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVYAGNA
CCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCEEEECCCCCEEEEECCCEEEEECCC
LRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYK
CCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCCCCCCEEEEEEEEEC
GKSVNPLRYLPQR
CCCCCHHHCCCCC
>Mature Secondary Structure 
SAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSSNTNSGMLITPPPKMG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCC
ATPQQAPQIQPVQRPVTQPMQTQPVTEQPVQMENGRIVYNRQYGNIPKGSYTGGSTYTVK
CCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCEEEEE
KGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVGNASGTPITGGNAITQADAAQ
CCCEEEEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCEECCCCCEECCHHHH
QGVVTRSAQNSTVAVASQPTITYSEGSGEQSANKMLPNNKPAGTVVTAPVTAPTVSTTEP
CCCEEECCCCCEEEEECCCEEEECCCCCCHHHHHCCCCCCCCCEEEECCCCCCEECCCCC
NASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGSKGQAIVATADGRVVYAGNA
CCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCEEEECCCCCEEEEECCCEEEEECCC
LRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYK
CCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEEEEECCCCCCCEEEEEEEEEC
GKSVNPLRYLPQR
CCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]