Click here to switch to the map view.

The map label for this gene is rhsD [H]

Identifier: 29142943

GI number: 29142943

Start: 2642116

End: 2644647

Strand: Reverse

Name: rhsD [H]

Synonym: t2566

Alternate gene names: 29142943

Gene position: 2644647-2642116 (Counterclockwise)

Preceding gene: 29142944

Following gene: 29142942

Centisome position: 55.19

GC content: 62.6

Gene sequence:

>2532_bases
ATGACGATGCACCGGGAGCCGGGCGGCGAACGGTATTACTACACCTGGGCGTGGTTTGAAGGCCCGGACGATGCGGCGTG
GCGGGTGACGGGCCATCATACGGACAGCGGCGAGCAGTACCGTCTGGACTGGAATCTGGCAGAACGTTCGCTGTGCGTGA
CGGATAGCATGGGGCGTACGCGCTGCCACTGGTGGGATGCGCAGGGCCTGGTGACGGCGTACCGGGACGAGGCCGGGCAG
ATGACCACTTTCCGCTGGAGCGATGAAGAGCGGTTACTGCTGGGGATGACGGACGCGCAGGGTGGCAAATGGCGTTATGT
CTATGACCGTCTCGGCCACCTGACGGAGACGCATGACCCGCTGGGCCGGGTTGAGCAGACGCAGTGGCACCCGGTGTGGC
ACCAGCCGGAAACGGAGGTGGATGCCGCGGGGGTGGCGTGGCGTTATGAGTATGATGAGCGGGGCAACCTGCAGGCGGTC
AGCGACCCGCTGCACCAGCGCACGGTATACGGGTATGACCGGCACGGCCAGGTGGTGCGGATAACCGACGCGCGGGGCGG
AGATAAATACCTGCAGTGGAACGAAGACGGACAGCTTATGCGCCACACGGACTGTTCTGGCTCGCAGACGGCATGGTTTT
ATGATGAACGCACGCGGCTGGAAAGGGTGACGGACGCGGAGAGTAACAGTACGCGTTACAGCTATGACGGCAACGGACAT
CTGACGGAGGTCATGTTCGCGGACGGGCGTACGGAGCGTTACCAGCCGGATGCGGCGGGACGGCTGGTGAAATATACGAG
CCCGGCGGGGCAAATAACACGCTGGCAGCGGGACGGCCAGGGGCGGGTGCGCAGGCAGACGGATGCGACGGGTCGCAGGA
CGGCGTATGAGTACGACGCTTACGGGCGGCTGACCACGCTCACGAACGAGAACGGGGAAAGCTACCGGTTCCGGTACGAT
GTTCTGGACCGGGTGACGGAACAGACGGACCCCGGCGGCAGCCGCCGGGCATACGGGTATAACGCGCTGAATGCGGTGAC
GGCAGTGATATACGGCGGGGAGCGCGGGGGAGAAATCCGCCACGGTCTGGAGCGTGATGCGGCGGGGAGGCTGACGGCGA
AAATCACGCCGGAGACGCGCACGGAATACCGGTACGACGCGGCGGACCGTCTGCTGGAAATCCGCCGCAGGCGGCATGAT
GCGGCGGAAGGCGGAGAGCCGGAAGTTATCCGGTTCAGCTACGACAGTGCGGGTAACCTGCTGAGCGAGGAGACGGCGCA
GGGCGTGCTGCAGCACCGGTACGATGTTCAGGGCAACCGCACAGAAACGCAGATGCCGGACGGGCGGACGCTGCGGTACC
TGTACTACGGGAGCGGACATCTCCAGCAAATCAACCTGGGGCGTGATGTCATCAGCGAGTTCACGCGCGACCACCTGCAC
CGTGAGGTGCAGCGGAGCCAGGGGCGGCTGGACATGCGGCGGATGTACGACCGGACGGGCCGGTTAACGCGGAAACTGAC
CTGTAAAGGAATGCGCGGTGTGGTGCCGGAGACGTTTATTGACCGGGAATATGCGTACAGCGGCCAGGATGAGCTGCTGA
AAAAGCGGCACAGCCGGCAGGGGGTGACGGATTATTTTTACGACACGACGGGGCGCATCACGGCGTGCCGGAATGAGGCA
TACCTGGACAGCTGGCAGTACGACGCGGCGGCGAACCTGCTGGACAGGCGGCAGGGAGAGACCGCGCAGGCGGGTGCAGG
CAGCGTGGTGCCGTTCAACCGGATAACGTCATATCGCGGGCTGCATTACCGTTACGATGAATATGGCCGGGTGGTGGAAA
AGCGGGGCCGCAACGGCACGCAGCACTACCGCTGGGACGCGGAGCACCGGCTGACGGAAGTGGCGGTCACCCGGGGGGGC
ACCGTACGGCGTTACGGGTACGTGTACGACGCGCCGGGCAGGCGGGTGGAGAAGCACGAGCTGGACGCGGAAGGAAAGCC
GTATAACCGGACGACGTTTTTATGGGACGGAATGCGGCTGGCACAGGAGTGCAGGCTGGGAAGAAGCAGCAGCCTGTATA
TCTACAGCGACCGGGGGAGCCACGAGCCGCTGGCGCGGGTGGACAGGGCGGCGCCGGGCGAAGCGGATGAGGTGCTGTAT
TACCATACGGACGTAAACGGCGCGCCGGAGGAGATGACGGACGGCGGGGGCAATATTGTCTGGGAAGCGGGCTATCAGGT
ATGGGGGAACCTGACGCATGAAAAAGAAACCCGGCCCGTACAGCAGAACCTGCGTTTCCAGGGGCAATATCTGGACAGGG
AAACGGGGCTGCATTACAATTTGTACAGATTTTATGATCCGGATATCGGGAAGTTTATATCGGGCGATCCGATAGGGTTA
GCGGGTGGAATAAACCTCTACCAATATGCGCCTAATCCGCTAAGTTATATAGATCCGCTAGGTTTATGTAAAAAATTTGC
TGGTAAAGGTTCTCCGGCAGAAAGGGCCAGGAATTATAGAAGCACTGGCTAG

Upstream 100 bases:

>100_bases
CATAAACGAACTGAACGTCCCTCAACCCGTGAATAGAACTCACAGTGGGTAAAATCCGGCACAGTATCAGCGCGAGTTTG
CGTACGACGACAACGACTGC

Downstream 100 bases:

>100_bases
GTAGGTGGAAAACGAAATATTGCAACATCCAATTATAATATTAATGGTCAAACAGGAACGGCTGATGCACTTAGTGGCAT
GAATACGAATAATTCACCAT

Product: Rhs-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 843; Mature: 842

Protein sequence:

>843_residues
MTMHREPGGERYYYTWAWFEGPDDAAWRVTGHHTDSGEQYRLDWNLAERSLCVTDSMGRTRCHWWDAQGLVTAYRDEAGQ
MTTFRWSDEERLLLGMTDAQGGKWRYVYDRLGHLTETHDPLGRVEQTQWHPVWHQPETEVDAAGVAWRYEYDERGNLQAV
SDPLHQRTVYGYDRHGQVVRITDARGGDKYLQWNEDGQLMRHTDCSGSQTAWFYDERTRLERVTDAESNSTRYSYDGNGH
LTEVMFADGRTERYQPDAAGRLVKYTSPAGQITRWQRDGQGRVRRQTDATGRRTAYEYDAYGRLTTLTNENGESYRFRYD
VLDRVTEQTDPGGSRRAYGYNALNAVTAVIYGGERGGEIRHGLERDAAGRLTAKITPETRTEYRYDAADRLLEIRRRRHD
AAEGGEPEVIRFSYDSAGNLLSEETAQGVLQHRYDVQGNRTETQMPDGRTLRYLYYGSGHLQQINLGRDVISEFTRDHLH
REVQRSQGRLDMRRMYDRTGRLTRKLTCKGMRGVVPETFIDREYAYSGQDELLKKRHSRQGVTDYFYDTTGRITACRNEA
YLDSWQYDAAANLLDRRQGETAQAGAGSVVPFNRITSYRGLHYRYDEYGRVVEKRGRNGTQHYRWDAEHRLTEVAVTRGG
TVRRYGYVYDAPGRRVEKHELDAEGKPYNRTTFLWDGMRLAQECRLGRSSSLYIYSDRGSHEPLARVDRAAPGEADEVLY
YHTDVNGAPEEMTDGGGNIVWEAGYQVWGNLTHEKETRPVQQNLRFQGQYLDRETGLHYNLYRFYDPDIGKFISGDPIGL
AGGINLYQYAPNPLSYIDPLGLCKKFAGKGSPAERARNYRSTG

Sequences:

>Translated_843_residues
MTMHREPGGERYYYTWAWFEGPDDAAWRVTGHHTDSGEQYRLDWNLAERSLCVTDSMGRTRCHWWDAQGLVTAYRDEAGQ
MTTFRWSDEERLLLGMTDAQGGKWRYVYDRLGHLTETHDPLGRVEQTQWHPVWHQPETEVDAAGVAWRYEYDERGNLQAV
SDPLHQRTVYGYDRHGQVVRITDARGGDKYLQWNEDGQLMRHTDCSGSQTAWFYDERTRLERVTDAESNSTRYSYDGNGH
LTEVMFADGRTERYQPDAAGRLVKYTSPAGQITRWQRDGQGRVRRQTDATGRRTAYEYDAYGRLTTLTNENGESYRFRYD
VLDRVTEQTDPGGSRRAYGYNALNAVTAVIYGGERGGEIRHGLERDAAGRLTAKITPETRTEYRYDAADRLLEIRRRRHD
AAEGGEPEVIRFSYDSAGNLLSEETAQGVLQHRYDVQGNRTETQMPDGRTLRYLYYGSGHLQQINLGRDVISEFTRDHLH
REVQRSQGRLDMRRMYDRTGRLTRKLTCKGMRGVVPETFIDREYAYSGQDELLKKRHSRQGVTDYFYDTTGRITACRNEA
YLDSWQYDAAANLLDRRQGETAQAGAGSVVPFNRITSYRGLHYRYDEYGRVVEKRGRNGTQHYRWDAEHRLTEVAVTRGG
TVRRYGYVYDAPGRRVEKHELDAEGKPYNRTTFLWDGMRLAQECRLGRSSSLYIYSDRGSHEPLARVDRAAPGEADEVLY
YHTDVNGAPEEMTDGGGNIVWEAGYQVWGNLTHEKETRPVQQNLRFQGQYLDRETGLHYNLYRFYDPDIGKFISGDPIGL
AGGINLYQYAPNPLSYIDPLGLCKKFAGKGSPAERARNYRSTG
>Mature_842_residues
TMHREPGGERYYYTWAWFEGPDDAAWRVTGHHTDSGEQYRLDWNLAERSLCVTDSMGRTRCHWWDAQGLVTAYRDEAGQM
TTFRWSDEERLLLGMTDAQGGKWRYVYDRLGHLTETHDPLGRVEQTQWHPVWHQPETEVDAAGVAWRYEYDERGNLQAVS
DPLHQRTVYGYDRHGQVVRITDARGGDKYLQWNEDGQLMRHTDCSGSQTAWFYDERTRLERVTDAESNSTRYSYDGNGHL
TEVMFADGRTERYQPDAAGRLVKYTSPAGQITRWQRDGQGRVRRQTDATGRRTAYEYDAYGRLTTLTNENGESYRFRYDV
LDRVTEQTDPGGSRRAYGYNALNAVTAVIYGGERGGEIRHGLERDAAGRLTAKITPETRTEYRYDAADRLLEIRRRRHDA
AEGGEPEVIRFSYDSAGNLLSEETAQGVLQHRYDVQGNRTETQMPDGRTLRYLYYGSGHLQQINLGRDVISEFTRDHLHR
EVQRSQGRLDMRRMYDRTGRLTRKLTCKGMRGVVPETFIDREYAYSGQDELLKKRHSRQGVTDYFYDTTGRITACRNEAY
LDSWQYDAAANLLDRRQGETAQAGAGSVVPFNRITSYRGLHYRYDEYGRVVEKRGRNGTQHYRWDAEHRLTEVAVTRGGT
VRRYGYVYDAPGRRVEKHELDAEGKPYNRTTFLWDGMRLAQECRLGRSSSLYIYSDRGSHEPLARVDRAAPGEADEVLYY
HTDVNGAPEEMTDGGGNIVWEAGYQVWGNLTHEKETRPVQQNLRFQGQYLDRETGLHYNLYRFYDPDIGKFISGDPIGLA
GGINLYQYAPNPLSYIDPLGLCKKFAGKGSPAERARNYRSTG

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=731, Percent_Identity=30.7797537619699, Blast_Score=191, Evalue=2e-49,
Organism=Escherichia coli, GI1786917, Length=756, Percent_Identity=31.2169312169312, Blast_Score=189, Evalue=8e-49,
Organism=Escherichia coli, GI48994942, Length=756, Percent_Identity=30.952380952381, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI1790020, Length=756, Percent_Identity=30.8201058201058, Blast_Score=185, Evalue=9e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 97294; Mature: 97163

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMHREPGGERYYYTWAWFEGPDDAAWRVTGHHTDSGEQYRLDWNLAERSLCVTDSMGRT
CCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCC
RCHWWDAQGLVTAYRDEAGQMTTFRWSDEERLLLGMTDAQGGKWRYVYDRLGHLTETHDP
EEEEECCCCCEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEHHHHHCCHHCCCCC
LGRVEQTQWHPVWHQPETEVDAAGVAWRYEYDERGNLQAVSDPLHQRTVYGYDRHGQVVR
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHCCHHHHCEECCCCCCCCEEE
ITDARGGDKYLQWNEDGQLMRHTDCSGSQTAWFYDERTRLERVTDAESNSTRYSYDGNGH
EECCCCCCCCEEECCCCCEEEECCCCCCCEEEEECHHHHHHHHHCCCCCCCEEEECCCCC
LTEVMFADGRTERYQPDAAGRLVKYTSPAGQITRWQRDGQGRVRRQTDATGRRTAYEYDA
EEEEEEECCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCEEECCCCCCCCEEEEECC
YGRLTTLTNENGESYRFRYDVLDRVTEQTDPGGSRRAYGYNALNAVTAVIYGGERGGEIR
CCEEEEEECCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCHHHHEEEEEEECCCCCCHHH
HGLERDAAGRLTAKITPETRTEYRYDAADRLLEIRRRRHDAAEGGEPEVIRFSYDSAGNL
HCCCCCCCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH
LSEETAQGVLQHRYDVQGNRTETQMPDGRTLRYLYYGSGHLQQINLGRDVISEFTRDHLH
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHH
REVQRSQGRLDMRRMYDRTGRLTRKLTCKGMRGVVPETFIDREYAYSGQDELLKKRHSRQ
HHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCHHCCCCHHHHHHHHHHCC
GVTDYFYDTTGRITACRNEAYLDSWQYDAAANLLDRRQGETAQAGAGSVVPFNRITSYRG
CCCHHEECCCCCEEEECCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCC
LHYRYDEYGRVVEKRGRNGTQHYRWDAEHRLTEVAVTRGGTVRRYGYVYDAPGRRVEKHE
CEEEHHHHHHHHHHHCCCCCCCEEECHHHHEEEEEEECCCEEEEEEEEECCCCCCCHHHH
LDAEGKPYNRTTFLWDGMRLAQECRLGRSSSLYIYSDRGSHEPLARVDRAAPGEADEVLY
CCCCCCCCCCEEEEECHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCEEE
YHTDVNGAPEEMTDGGGNIVWEAGYQVWGNLTHEKETRPVQQNLRFQGQYLDRETGLHYN
EEECCCCCCHHHCCCCCEEEEECCHHHHCCCCCCHHCCCHHHCCCCCCEEECCCCCCEEE
LYRFYDPDIGKFISGDPIGLAGGINLYQYAPNPLSYIDPLGLCKKFAGKGSPAERARNYR
EEEEECCCCCCCCCCCCCEEECCCEEEEECCCCHHHCCHHHHHHHHCCCCCHHHHHHCCC
STG
CCC
>Mature Secondary Structure 
TMHREPGGERYYYTWAWFEGPDDAAWRVTGHHTDSGEQYRLDWNLAERSLCVTDSMGRT
CCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCC
RCHWWDAQGLVTAYRDEAGQMTTFRWSDEERLLLGMTDAQGGKWRYVYDRLGHLTETHDP
EEEEECCCCCEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEHHHHHCCHHCCCCC
LGRVEQTQWHPVWHQPETEVDAAGVAWRYEYDERGNLQAVSDPLHQRTVYGYDRHGQVVR
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHCCHHHHCEECCCCCCCCEEE
ITDARGGDKYLQWNEDGQLMRHTDCSGSQTAWFYDERTRLERVTDAESNSTRYSYDGNGH
EECCCCCCCCEEECCCCCEEEECCCCCCCEEEEECHHHHHHHHHCCCCCCCEEEECCCCC
LTEVMFADGRTERYQPDAAGRLVKYTSPAGQITRWQRDGQGRVRRQTDATGRRTAYEYDA
EEEEEEECCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCEEECCCCCCCCEEEEECC
YGRLTTLTNENGESYRFRYDVLDRVTEQTDPGGSRRAYGYNALNAVTAVIYGGERGGEIR
CCEEEEEECCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCHHHHEEEEEEECCCCCCHHH
HGLERDAAGRLTAKITPETRTEYRYDAADRLLEIRRRRHDAAEGGEPEVIRFSYDSAGNL
HCCCCCCCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH
LSEETAQGVLQHRYDVQGNRTETQMPDGRTLRYLYYGSGHLQQINLGRDVISEFTRDHLH
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHH
REVQRSQGRLDMRRMYDRTGRLTRKLTCKGMRGVVPETFIDREYAYSGQDELLKKRHSRQ
HHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCHHCCCCHHHHHHHHHHCC
GVTDYFYDTTGRITACRNEAYLDSWQYDAAANLLDRRQGETAQAGAGSVVPFNRITSYRG
CCCHHEECCCCCEEEECCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCC
LHYRYDEYGRVVEKRGRNGTQHYRWDAEHRLTEVAVTRGGTVRRYGYVYDAPGRRVEKHE
CEEEHHHHHHHHHHHCCCCCCCEEECHHHHEEEEEEECCCEEEEEEEEECCCCCCCHHHH
LDAEGKPYNRTTFLWDGMRLAQECRLGRSSSLYIYSDRGSHEPLARVDRAAPGEADEVLY
CCCCCCCCCCEEEEECHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCEEE
YHTDVNGAPEEMTDGGGNIVWEAGYQVWGNLTHEKETRPVQQNLRFQGQYLDRETGLHYN
EEECCCCCCHHHCCCCCEEEEECCHHHHCCCCCCHHCCCHHHCCCCCCEEECCCCCCEEE
LYRFYDPDIGKFISGDPIGLAGGINLYQYAPNPLSYIDPLGLCKKFAGKGSPAERARNYR
EEEEECCCCCCCCCCCCCEEECCCEEEEECCCCHHHCCHHHHHHHHCCCCCHHHHHHCCC
STG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1766878; 9278503; 2644231; 2403547; 7934896 [H]