| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
Click here to switch to the map view.
The map label for this gene is yaiT [H]
Identifier: 29142877
GI number: 29142877
Start: 2561488
End: 2564373
Strand: Reverse
Name: yaiT [H]
Synonym: t2491
Alternate gene names: 29142877
Gene position: 2564373-2561488 (Counterclockwise)
Preceding gene: 29142879
Following gene: 29142876
Centisome position: 53.51
GC content: 45.25
Gene sequence:
>2886_bases ATGCACTCCTGGAAAAAGAAACTTGTAGTCTCACAATTAGCATTGGCTTGCACTCTGGCAATCACTTCTCAGGCGAATGC TACTACATACGATACTTTTGGGTACCATGACGATGCGGCCACTGTTTTTGGCTGGGATGATACCAACGACCATGACTATC TAACTTATGGTGGTTATGTCTACAACACCCCAGCTAGTGATAGCGGCTATTTTGATACAAAATTTACTGGTGACACTGTA AATGGCGTTATTTCAACTTATTATCTGAATCATGATTACGCCAATGATACTGCGAATACATTGGATGTTACCAACTCAAC CATTCATGGTATGATTACTTCTTACCAGATGGGCTACGGTCAATATGTTTGGACTAACGGTAGTGATTATACGACCCATG ATTGGGTTGATGATGATACTTTTAATCTAAACATTTCTAATTCTACAATCGATGATGACTTTGAGGCGTTTTACTTCACT GATACCTATCTCGATTCTGATGGAAAAACAGTCAAAACCGATTATGACAAATTGGTTACTGCTGGTTTAGGCACTGCTAT AACCCTTGATGTTGAAAGTAATATTAATATTACTAACAATTCTCATGTGGCTGGTATTGCTCTTTACCAAAATGATCTTG GCAATTCAACATATACAACCGAAGCACATCAGTGGGATAACACTATTAACGTAGCGAATTCAACTGTAACTTCAGGCTCC TGGTCCGAAGATGAGGAACAAGGCCATTTTGGCAATTCAAGTGAACCAAGCGATTATAATGGCAATGGTTGGAATAAAGA TGATGTTGCTTTAGCTTTTGTTGACGATCCTTATTCAAATTACCGTATGGTAAACAACGTTACGTTTACCGACTCGCAGT TACTGGGGGATGTCGTCCTTGAGAGCTCCTGGAATTATAATTTCTATTCTAATGGCCGTTTAGTCGATGATTCCACTACT GTCTATACGAATGGTGGTTGGGCAGATGATGATCAAAACGTTGATCACCTGACATTGACCCTGAATAACACTAAATGGGT TGGTGCGGCGGTTAATGATTCACAGTCAATGGATCCAGTGCAATTCTATGATGTTGATGCCAATAGCTTAGATCCAGACT CGACTAATTATGATGCCTGGGGACGTGTTAATAGTGCTGCTTCCTTCCAGAGCGGTATCTTTGACGTCAGCTTGAATAAT GGATCTGAGTGGGATACCACAAAAACATCTGTAATAGATACCTTAGCAGTAAATAGCGGCTCTCAGGTTGATGTCGCTAA TGGCTCCAATTTAACCGCTGATACCATTACTCTAAACGGTGGTTCAGCTATGAACATCGGGGAAGGTGGCTACGTTGATA CTGATCACCTGACCGTTGATACTTTCAGTACAGTTACTTTGGCTGATGATGTCAGCAGTGCATGGAGTGATGATGCACTG TATGCTAATACTATTACCGTAACTCACGGTGGTATGTTAGATATTCAAACCAACAATACAAACGCAGATAGCGTCATTGA TACTGATACGTTAGAACTGACTAGCAGTAACGTTGCGGATAATAATGGCAATGTTTATGCTGGTGTGTTCAACATTCATA GCAATGACTATACCCTAAATGCCGATTTGGTGAACGACCGTACCTGGGATACCACTCAGGCTAACTACGGTTACGGCGTT GTCGCGATGAACTCTGATGGTCATCTGACTATCAACGGTAACGGCGATATCAACAATGGTGACGAGGCTGATGCAAGTAG CACCACTGACAACGTTGTAGCGGCCACTGGTAATTATAAAGTGCGCATCGACAACGCTACTGGTGCCGGTTCTGTTGCGG ATTACAAAGGTAACGAGCTGATTTATGTCAATGACATAAACACCGACGCTACCTTCTCTGCAGCAAACAAAGCTGACCTG GGTGCTTACACCTATCAGGCTAAGCAGGAAGGCAACACTGTCGTGCTGGAACAGATGGAACTGACCGACTACGCTAACAT GGCGCTGAGCATTCCTTCTGCGAACACCAATATCTGGAACCTGGAACAAGACACCGTTGGTACTCGTCTGACCAACGCTC GTCATGGCCTGGCGGATAACGGCGGCGCATGGGTAAGCTACTTCGGCGGTAACTTCAACGGCGACAACGGCACCATTAAC TACGATCAGGATGTTAATGGCATCATGGTCGGTGTTGATACCAAAGTTGACGGTAACAACGCTAAGTGGATCGTTGGTGC GGCAGCAGGCTTCGCGAAAGGCGATCTGAGCGATCGTACCGGTCAGGTGGATCAGGACAGCCAGTCTGCCTACATCTACT CTTCCGCTCGTTTCGCAAACAACATCTTTGTTGACGGTAACTTAAGCTACTCTCACTTCAACAACGATTTGTCTGCTAAC ATGAGCGACGGTACTTACGTTGACGGCAACACCTCTTCTGACGCCTGGGGCTTCGGCTTGAAACTGGGTTATGATCTGAA GCTGGGTGATGCAGGCTACGTAACGCCTTACGGCAGCGTATCCGGTCTGTTCCAGTCCGGCGACGACTACCAGCTGAGCA ACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTCGGTGTAGATGCAGGTTATACCTTCACTTAC AGCGAAGATCAGGCGCTGACCCCGTACTTCAAACTGGCTTACGTTTACGACGACTCCAACAACGATGCTGACGTAAACGG CGACTCTATCGACAACGGCGTAGAAGGTTTTGCGGTACGTGTTGGTCTGGGTACTCAGTTCAGCTTCACGAAGAACTTCA GCGCCTACACCGATGCTAACTACCTCGGCGGCGGTGATGTTGATCAAGACTGGTCTGCAAACGTTGGTGTTAAATATACC TGGTAA
Upstream 100 bases:
>100_bases GCAATGACGCCGCATAATCCTCCTTGCTAAACATCTATATGTTTTTATGCATTGATAATTGATGGATCAACTATATTACG TCCCTGAGGAGGGATGACAA
Downstream 100 bases:
>100_bases TCATTTTCTCTCAGGAGAAATAAAAGTAATTTAAACTGAAAAATGCCCGTCAAGGACTTGACGGGCATTATTGCAAGGAA TGCATATGTTATCTTTAAAC
Product: autotransporter/virulence factor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 961; Mature: 961
Protein sequence:
>961_residues MHSWKKKLVVSQLALACTLAITSQANATTYDTFGYHDDAATVFGWDDTNDHDYLTYGGYVYNTPASDSGYFDTKFTGDTV NGVISTYYLNHDYANDTANTLDVTNSTIHGMITSYQMGYGQYVWTNGSDYTTHDWVDDDTFNLNISNSTIDDDFEAFYFT DTYLDSDGKTVKTDYDKLVTAGLGTAITLDVESNINITNNSHVAGIALYQNDLGNSTYTTEAHQWDNTINVANSTVTSGS WSEDEEQGHFGNSSEPSDYNGNGWNKDDVALAFVDDPYSNYRMVNNVTFTDSQLLGDVVLESSWNYNFYSNGRLVDDSTT VYTNGGWADDDQNVDHLTLTLNNTKWVGAAVNDSQSMDPVQFYDVDANSLDPDSTNYDAWGRVNSAASFQSGIFDVSLNN GSEWDTTKTSVIDTLAVNSGSQVDVANGSNLTADTITLNGGSAMNIGEGGYVDTDHLTVDTFSTVTLADDVSSAWSDDAL YANTITVTHGGMLDIQTNNTNADSVIDTDTLELTSSNVADNNGNVYAGVFNIHSNDYTLNADLVNDRTWDTTQANYGYGV VAMNSDGHLTINGNGDINNGDEADASSTTDNVVAATGNYKVRIDNATGAGSVADYKGNELIYVNDINTDATFSAANKADL GAYTYQAKQEGNTVVLEQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNARHGLADNGGAWVSYFGGNFNGDNGTIN YDQDVNGIMVGVDTKVDGNNAKWIVGAAAGFAKGDLSDRTGQVDQDSQSAYIYSSARFANNIFVDGNLSYSHFNNDLSAN MSDGTYVDGNTSSDAWGFGLKLGYDLKLGDAGYVTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTY SEDQALTPYFKLAYVYDDSNNDADVNGDSIDNGVEGFAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSANVGVKYT W
Sequences:
>Translated_961_residues MHSWKKKLVVSQLALACTLAITSQANATTYDTFGYHDDAATVFGWDDTNDHDYLTYGGYVYNTPASDSGYFDTKFTGDTV NGVISTYYLNHDYANDTANTLDVTNSTIHGMITSYQMGYGQYVWTNGSDYTTHDWVDDDTFNLNISNSTIDDDFEAFYFT DTYLDSDGKTVKTDYDKLVTAGLGTAITLDVESNINITNNSHVAGIALYQNDLGNSTYTTEAHQWDNTINVANSTVTSGS WSEDEEQGHFGNSSEPSDYNGNGWNKDDVALAFVDDPYSNYRMVNNVTFTDSQLLGDVVLESSWNYNFYSNGRLVDDSTT VYTNGGWADDDQNVDHLTLTLNNTKWVGAAVNDSQSMDPVQFYDVDANSLDPDSTNYDAWGRVNSAASFQSGIFDVSLNN GSEWDTTKTSVIDTLAVNSGSQVDVANGSNLTADTITLNGGSAMNIGEGGYVDTDHLTVDTFSTVTLADDVSSAWSDDAL YANTITVTHGGMLDIQTNNTNADSVIDTDTLELTSSNVADNNGNVYAGVFNIHSNDYTLNADLVNDRTWDTTQANYGYGV VAMNSDGHLTINGNGDINNGDEADASSTTDNVVAATGNYKVRIDNATGAGSVADYKGNELIYVNDINTDATFSAANKADL GAYTYQAKQEGNTVVLEQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNARHGLADNGGAWVSYFGGNFNGDNGTIN YDQDVNGIMVGVDTKVDGNNAKWIVGAAAGFAKGDLSDRTGQVDQDSQSAYIYSSARFANNIFVDGNLSYSHFNNDLSAN MSDGTYVDGNTSSDAWGFGLKLGYDLKLGDAGYVTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTY SEDQALTPYFKLAYVYDDSNNDADVNGDSIDNGVEGFAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSANVGVKYT W >Mature_961_residues MHSWKKKLVVSQLALACTLAITSQANATTYDTFGYHDDAATVFGWDDTNDHDYLTYGGYVYNTPASDSGYFDTKFTGDTV NGVISTYYLNHDYANDTANTLDVTNSTIHGMITSYQMGYGQYVWTNGSDYTTHDWVDDDTFNLNISNSTIDDDFEAFYFT DTYLDSDGKTVKTDYDKLVTAGLGTAITLDVESNINITNNSHVAGIALYQNDLGNSTYTTEAHQWDNTINVANSTVTSGS WSEDEEQGHFGNSSEPSDYNGNGWNKDDVALAFVDDPYSNYRMVNNVTFTDSQLLGDVVLESSWNYNFYSNGRLVDDSTT VYTNGGWADDDQNVDHLTLTLNNTKWVGAAVNDSQSMDPVQFYDVDANSLDPDSTNYDAWGRVNSAASFQSGIFDVSLNN GSEWDTTKTSVIDTLAVNSGSQVDVANGSNLTADTITLNGGSAMNIGEGGYVDTDHLTVDTFSTVTLADDVSSAWSDDAL YANTITVTHGGMLDIQTNNTNADSVIDTDTLELTSSNVADNNGNVYAGVFNIHSNDYTLNADLVNDRTWDTTQANYGYGV VAMNSDGHLTINGNGDINNGDEADASSTTDNVVAATGNYKVRIDNATGAGSVADYKGNELIYVNDINTDATFSAANKADL GAYTYQAKQEGNTVVLEQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNARHGLADNGGAWVSYFGGNFNGDNGTIN YDQDVNGIMVGVDTKVDGNNAKWIVGAAAGFAKGDLSDRTGQVDQDSQSAYIYSSARFANNIFVDGNLSYSHFNNDLSAN MSDGTYVDGNTSSDAWGFGLKLGYDLKLGDAGYVTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTY SEDQALTPYFKLAYVYDDSNNDADVNGDSIDNGVEGFAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSANVGVKYT W
Specific function: Unknown
COG id: COG3468
COG function: function code MU; Type V secretory pathway, adhesin AidA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
Organism=Escherichia coli, GI87082145, Length=303, Percent_Identity=25.4125412541254, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR006315 - InterPro: IPR011050 - InterPro: IPR003991 [H]
Pfam domain/function: PF03797 Autotransporter [H]
EC number: NA
Molecular weight: Translated: 103989; Mature: 103989
Theoretical pI: Translated: 3.69; Mature: 3.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSWKKKLVVSQLALACTLAITSQANATTYDTFGYHDDAATVFGWDDTNDHDYLTYGGYV CCHHHHHHHHHHHHEEEEEEEECCCCCEEEECCCEECCCCEEEECCCCCCCCEEEECCEE YNTPASDSGYFDTKFTGDTVNGVISTYYLNHDYANDTANTLDVTNSTIHGMITSYQMGYG EECCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCEEEECCCEEEEEEEEEECCCC QYVWTNGSDYTTHDWVDDDTFNLNISNSTIDDDFEAFYFTDTYLDSDGKTVKTDYDKLVT EEEEECCCCCEECCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEECCHHHHHH AGLGTAITLDVESNINITNNSHVAGIALYQNDLGNSTYTTEAHQWDNTINVANSTVTSGS CCCCEEEEEEECCCEEECCCCCEEEEEEEECCCCCCEEECCHHCCCCEEEECCCEECCCC WSEDEEQGHFGNSSEPSDYNGNGWNKDDVALAFVDDPYSNYRMVNNVTFTDSQLLGDVVL CCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCHHHHHHHEE ESSWNYNFYSNGRLVDDSTTVYTNGGWADDDQNVDHLTLTLNNTKWVGAAVNDSQSMDPV ECCCCCCEEECCEEECCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCE QFYDVDANSLDPDSTNYDAWGRVNSAASFQSGIFDVSLNNGSEWDTTKTSVIDTLAVNSG EEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCCCHHHEEEEEEECCC SQVDVANGSNLTADTITLNGGSAMNIGEGGYVDTDHLTVDTFSTVTLADDVSSAWSDDAL CEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCEEEECEEEEEEECCCHHCCCCCCE YANTITVTHGGMLDIQTNNTNADSVIDTDTLELTSSNVADNNGNVYAGVFNIHSNDYTLN EEEEEEEECCCEEEEEECCCCCCCEEECCEEEEECCCCCCCCCCEEEEEEEEECCCEEEE ADLVNDRTWDTTQANYGYGVVAMNSDGHLTINGNGDINNGDEADASSTTDNVVAATGNYK EEEECCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCEE VRIDNATGAGSVADYKGNELIYVNDINTDATFSAANKADLGAYTYQAKQEGNTVVLEQME EEEECCCCCCCEEECCCCEEEEEEECCCCCEEECCCCCCCCEEEEEHHCCCCEEEEEEEE LTDYANMALSIPSANTNIWNLEQDTVGTRLTNARHGLADNGGAWVSYFGGNFNGDNGTIN CCCCCCEEEECCCCCCEEEECCHHHCCCEECCCCCCCCCCCCEEEEEECCEECCCCCEEE YDQDVNGIMVGVDTKVDGNNAKWIVGAAAGFAKGDLSDRTGQVDQDSQSAYIYSSARFAN ECCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC NIFVDGNLSYSHFNNDLSANMSDGTYVDGNTSSDAWGFGLKLGYDLKLGDAGYVTPYGSV EEEEECCCCHHHCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEEEEECCCCEECCCCCH SGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLAYVYDDSN HHHHCCCCCEEECCCEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEEEECCC NDADVNGDSIDNGVEGFAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSANVGVKYT CCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE W C >Mature Secondary Structure MHSWKKKLVVSQLALACTLAITSQANATTYDTFGYHDDAATVFGWDDTNDHDYLTYGGYV CCHHHHHHHHHHHHEEEEEEEECCCCCEEEECCCEECCCCEEEECCCCCCCCEEEECCEE YNTPASDSGYFDTKFTGDTVNGVISTYYLNHDYANDTANTLDVTNSTIHGMITSYQMGYG EECCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCEEEECCCEEEEEEEEEECCCC QYVWTNGSDYTTHDWVDDDTFNLNISNSTIDDDFEAFYFTDTYLDSDGKTVKTDYDKLVT EEEEECCCCCEECCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEECCHHHHHH AGLGTAITLDVESNINITNNSHVAGIALYQNDLGNSTYTTEAHQWDNTINVANSTVTSGS CCCCEEEEEEECCCEEECCCCCEEEEEEEECCCCCCEEECCHHCCCCEEEECCCEECCCC WSEDEEQGHFGNSSEPSDYNGNGWNKDDVALAFVDDPYSNYRMVNNVTFTDSQLLGDVVL CCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCHHHHHHHEE ESSWNYNFYSNGRLVDDSTTVYTNGGWADDDQNVDHLTLTLNNTKWVGAAVNDSQSMDPV ECCCCCCEEECCEEECCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCE QFYDVDANSLDPDSTNYDAWGRVNSAASFQSGIFDVSLNNGSEWDTTKTSVIDTLAVNSG EEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCCCHHHEEEEEEECCC SQVDVANGSNLTADTITLNGGSAMNIGEGGYVDTDHLTVDTFSTVTLADDVSSAWSDDAL CEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCEEEECEEEEEEECCCHHCCCCCCE YANTITVTHGGMLDIQTNNTNADSVIDTDTLELTSSNVADNNGNVYAGVFNIHSNDYTLN EEEEEEEECCCEEEEEECCCCCCCEEECCEEEEECCCCCCCCCCEEEEEEEEECCCEEEE ADLVNDRTWDTTQANYGYGVVAMNSDGHLTINGNGDINNGDEADASSTTDNVVAATGNYK EEEECCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCEE VRIDNATGAGSVADYKGNELIYVNDINTDATFSAANKADLGAYTYQAKQEGNTVVLEQME EEEECCCCCCCEEECCCCEEEEEEECCCCCEEECCCCCCCCEEEEEHHCCCCEEEEEEEE LTDYANMALSIPSANTNIWNLEQDTVGTRLTNARHGLADNGGAWVSYFGGNFNGDNGTIN CCCCCCEEEECCCCCCEEEECCHHHCCCEECCCCCCCCCCCCEEEEEECCEECCCCCEEE YDQDVNGIMVGVDTKVDGNNAKWIVGAAAGFAKGDLSDRTGQVDQDSQSAYIYSSARFAN ECCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC NIFVDGNLSYSHFNNDLSANMSDGTYVDGNTSSDAWGFGLKLGYDLKLGDAGYVTPYGSV EEEEECCCCHHHCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEEEEECCCCEECCCCCH SGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLAYVYDDSN HHHHCCCCCEEECCCEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEEEECCC NDADVNGDSIDNGVEGFAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSANVGVKYT CCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE W C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11677609 [H]