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The map label for this gene is cyoD [H]

Identifier: 29142808

GI number: 29142808

Start: 2494368

End: 2494697

Strand: Direct

Name: cyoD [H]

Synonym: t2420

Alternate gene names: 29142808

Gene position: 2494368-2494697 (Clockwise)

Preceding gene: 29142807

Following gene: 29142809

Centisome position: 52.05

GC content: 51.52

Gene sequence:

>330_bases
ATGAGTCATTCTACCGAGAGCGGCGGCGCATCCCACGGCAGCGTAAAAACGTACATGACCGGCTTTATCCTGTCGGTCAT
CCTGACGGTTATTCCATTCTGGATGGTGATGACCGGCGCTGCCTCTCCGGCCGTTATTCTGGGATCTATCCTGGCAATGG
CAGTGGTGCAGATTTTGGTGCATCTGGTGTGTTTCCTGCACATGAACACCAAATCTGATGAAGGCTGGAACATGACGGCC
TTCATCTTTACCGTGCTGATCATCGCCATCCTGGTTGTGGGCTCCATCTGGATTATGTGGAACCTCAACTACAACATGAT
GATGCACTAA

Upstream 100 bases:

>100_bases
CTAACCGTACCCGCATCATGTGCCTGAGCCTGTTCTGGCACTTCCTGGATGTGATTTGGATTTGCGTATTCACTGTTGTT
TATCTGATGGGGGCGATGTA

Downstream 100 bases:

>100_bases
GAGCGGCGAGTATGATGTTTAAGCAATACCTGCAAGTAACGAAACCAGGCATCATCTTTGGCAACCTGATCTCGGTGATC
GGGGGATTTCTGCTGGCCTC

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSHSTESGGASHGSVKTYMTGFILSVILTVIPFWMVMTGAASPAVILGSILAMAVVQILVHLVCFLHMNTKSDEGWNMTA
FIFTVLIIAILVVGSIWIMWNLNYNMMMH

Sequences:

>Translated_109_residues
MSHSTESGGASHGSVKTYMTGFILSVILTVIPFWMVMTGAASPAVILGSILAMAVVQILVHLVCFLHMNTKSDEGWNMTA
FIFTVLIIAILVVGSIWIMWNLNYNMMMH
>Mature_108_residues
SHSTESGGASHGSVKTYMTGFILSVILTVIPFWMVMTGAASPAVILGSILAMAVVQILVHLVCFLHMNTKSDEGWNMTAF
IFTVLIIAILVVGSIWIMWNLNYNMMMH

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=109, Percent_Identity=93.5779816513761, Blast_Score=206, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 11964; Mature: 11832

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
10.1 %Met     (Translated Protein)
11.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
9.3 %Met     (Mature Protein)
10.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSTESGGASHGSVKTYMTGFILSVILTVIPFWMVMTGAASPAVILGSILAMAVVQILV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HLVCFLHMNTKSDEGWNMTAFIFTVLIIAILVVGSIWIMWNLNYNMMMH
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEECC
>Mature Secondary Structure 
SHSTESGGASHGSVKTYMTGFILSVILTVIPFWMVMTGAASPAVILGSILAMAVVQILV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HLVCFLHMNTKSDEGWNMTAFIFTVLIIAILVVGSIWIMWNLNYNMMMH
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]