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The map label for this gene is tnpA [H]

Identifier: 29142790

GI number: 29142790

Start: 2473258

End: 2473716

Strand: Reverse

Name: tnpA [H]

Synonym: t2402

Alternate gene names: 29142790

Gene position: 2473716-2473258 (Counterclockwise)

Preceding gene: 29142791

Following gene: 29142788

Centisome position: 51.62

GC content: 45.1

Gene sequence:

>459_bases
ATGAGGGACGAAAAGAGCTTAGCGCACACCCGATGGAACTGTAAATATCACATAGTTTTCGCGCCCAAATACCGAAGACA
AGCGTTCTATGGAGAGAAGCGTAGGGCAGTAGGCAGCATATTAAGAAAATTGTGTGAATGGAAAAACGTACGAATTCTGG
AAGCAGAATGTTGTGCAGATCATATTCACATGCTTCTGGAGATCCCGACGAAGATGAGTGTGTCGAGTTTCATGGGATAT
CTGAAGGGTAAAAGTAGTCTGATGCTTTACGAGCAGTTTGGGGATCTAAAATTCAAATACAGGAACAGGGAGTTCTGGTG
CAGAGGGTACTATGTCGATACGGTGGGTAAGAATACGGCGAAGATACAGGACTACATAAAGCACCAGCTTGAAGAGGATA
AAATGGGTGAGCAATTATCGATCCCGTATCCGGGCAGCCTGTTTACGGGCCGTAAGTAA

Upstream 100 bases:

>100_bases
TTCAGCTTTAAGCCAGTTATTAAAACCCCTTTTGATTTGTTAAAACATCTTGCGGTCTGGCAACTGCAAAAGTTCAACAA
GAAATCAAAAGGGGGTCCCA

Downstream 100 bases:

>100_bases
CGAAGTTTGATGCAAATGTCAGATCGTATGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTACAGGCGCATCAGAAAA
ACCTCCGGCTATGCCGGAGG

Product: insertion sequence element IS200 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCADHIHMLLEIPTKMSVSSFMGY
LKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTGRK

Sequences:

>Translated_152_residues
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCADHIHMLLEIPTKMSVSSFMGY
LKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTGRK
>Mature_152_residues
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCADHIHMLLEIPTKMSVSSFMGY
LKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTGRK

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 18077; Mature: 18077

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCAD
CCCCCCHHHEECCCEEEEEECCCHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEHHHHHH
HIHMLLEIPTKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTA
HHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEECCCEEEEEEEEEECCCCCHH
KIQDYIKHQLEEDKMGEQLSIPYPGSLFTGRK
HHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC
>Mature Secondary Structure
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCAD
CCCCCCHHHEECCCEEEEEECCCHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEHHHHHH
HIHMLLEIPTKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTA
HHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEECCCEEEEEEEEEECCCCCHH
KIQDYIKHQLEEDKMGEQLSIPYPGSLFTGRK
HHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]