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The map label for this gene is sfbC [H]

Identifier: 29142738

GI number: 29142738

Start: 2414230

End: 2414889

Strand: Reverse

Name: sfbC [H]

Synonym: t2348

Alternate gene names: 29142738

Gene position: 2414889-2414230 (Counterclockwise)

Preceding gene: 29142739

Following gene: 29142735

Centisome position: 50.39

GC content: 54.24

Gene sequence:

>660_bases
GTGGATGATTTATTGCCGGATTTAACGCTGGCGTTCAATGAAACTTTCCAGATGTTGAGTATTTCAACGGTGCTGGCGAT
TCTTGGCGGTCTACCGCTCGGTTTTCTGATTTTTGTCACCGATCGTCATCTGTTCTGGCAGAACCGTTTTATTTATCTTG
TCGCCTCGGTTCTGGTGAATATTATCCGCTCGGTGCCATTTGTTATTTTACTGGTGCTGTTACTGCCGCTAACGCAGCTT
TTGCTGGGCAATACGATAGGCCCGATTGCAGCCTCCGTCCCGCTGTCGGTGGCCGCAATCGCGTTTTATGCACGCCTGGT
AGATAGCGCGCTCCGTGAAGTCGATAAAGGGATTATTGAGGCGGCGCTGGCATTCGGCGCTAGTCCGATGCGTATTATCT
GTACCGTACTGTTGCCGGAAGCCAGCGCAGGGCTGCTGCGCGGCCTGACGATTACGCTGGTAAGCTTAATCGGCTACTCG
GCGATGGCCGGGATTGTCGGCGGCGGCGGGGTAGGCGACCTGGCGATTCGCTATGGCTACTACCGTTACGAAACCGAAGT
GATGGTTGTTACCGTAGTGGCGCTGATTGTGCTGGTTCAGGTCGTTCAGATGCTGGGCGACTGGCTGGCAAAACGTGCCG
ACAAGCGCGACAGACACTAA

Upstream 100 bases:

>100_bases
GGCATTCTGGTGGTGCAATTAACCGCGCCGCATAATCCAACGGCGGTGGCGGCCGCCGTGGAGCATATCCGTCAACGTAC
TGCACAGGTGGAGGTGATCC

Downstream 100 bases:

>100_bases
GCCGGCTCAATGTAGCGTCAGCCGGCAATAAAAATAAGCTATTGCGCTTTTAGCCAGTTGGCAACGTCTTGCCATGTGCC
GCGAAAAACGATATTCGCGG

Product: ABC transporter integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDDLLPDLTLAFNETFQMLSISTVLAILGGLPLGFLIFVTDRHLFWQNRFIYLVASVLVNIIRSVPFVILLVLLLPLTQL
LLGNTIGPIAASVPLSVAAIAFYARLVDSALREVDKGIIEAALAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYS
AMAGIVGGGGVGDLAIRYGYYRYETEVMVVTVVALIVLVQVVQMLGDWLAKRADKRDRH

Sequences:

>Translated_219_residues
MDDLLPDLTLAFNETFQMLSISTVLAILGGLPLGFLIFVTDRHLFWQNRFIYLVASVLVNIIRSVPFVILLVLLLPLTQL
LLGNTIGPIAASVPLSVAAIAFYARLVDSALREVDKGIIEAALAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYS
AMAGIVGGGGVGDLAIRYGYYRYETEVMVVTVVALIVLVQVVQMLGDWLAKRADKRDRH
>Mature_219_residues
MDDLLPDLTLAFNETFQMLSISTVLAILGGLPLGFLIFVTDRHLFWQNRFIYLVASVLVNIIRSVPFVILLVLLLPLTQL
LLGNTIGPIAASVPLSVAAIAFYARLVDSALREVDKGIIEAALAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYS
AMAGIVGGGGVGDLAIRYGYYRYETEVMVVTVVALIVLVQVVQMLGDWLAKRADKRDRH

Specific function: Part of the binding-protein-dependent transport system for D-methionine. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG2011

COG function: function code P; ABC-type metal ion transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1786397, Length=203, Percent_Identity=44.8275862068966, Blast_Score=139, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23670; Mature: 23670

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLLPDLTLAFNETFQMLSISTVLAILGGLPLGFLIFVTDRHLFWQNRFIYLVASVLVN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIRSVPFVILLVLLLPLTQLLLGNTIGPIAASVPLSVAAIAFYARLVDSALREVDKGIIE
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYSAMAGIVGGGGVGDLAIRYGY
HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
YRYETEVMVVTVVALIVLVQVVQMLGDWLAKRADKRDRH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDDLLPDLTLAFNETFQMLSISTVLAILGGLPLGFLIFVTDRHLFWQNRFIYLVASVLVN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIRSVPFVILLVLLLPLTQLLLGNTIGPIAASVPLSVAAIAFYARLVDSALREVDKGIIE
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYSAMAGIVGGGGVGDLAIRYGY
HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
YRYETEVMVVTVVALIVLVQVVQMLGDWLAKRADKRDRH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]