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The map label for this gene is ybbF [H]

Identifier: 29142718

GI number: 29142718

Start: 2389429

End: 2390151

Strand: Direct

Name: ybbF [H]

Synonym: t2326

Alternate gene names: 29142718

Gene position: 2389429-2390151 (Clockwise)

Preceding gene: 29142717

Following gene: 29142719

Centisome position: 49.86

GC content: 55.74

Gene sequence:

>723_bases
GTGGCGACACTGTTTATTGCAGACTTGCATCTGCAAACGGAAGAACCGGCGATCGTCGCCGGTTTTCTGCGTTTTTTAGC
CGTAGAAGCCCGTCAGGCCGACGCGCTGTATATTCTTGGCGATCTCTTCGAGGCTTGGATTGGCGACGACGACCCCAACC
CGCTACATCGTGAAATGGCCGTTGCCATTAAATCGCTGGTTGATTCCGGCGTCCCTTGCTTCTTTATTCATGGTAATCGC
GACTTCCTGATTGGCAAACGCTTTGCCCGCGAAAGCGGCATGACGCTACTACCGCAGGAAAAAGTGCTCGACCTGTATGG
CCGCAATGTGTTGATTATGCACGGCGATACGCTCTGTACCGATGATGCCGGATATCAGGCGTTTCGCGCCAAAGTCCATA
ATCCGTGGGTTCAACGGCCGTTCCTTACCCTGCCGCTGTTTATCCGCCGCCGTATCGCCGCCAGAATGCGCGCCGGCAGT
AAAGCCGCCAACAGCAGCAAATCGCTGGATATTATGGACGTCAATGCGCAGACCGTCGTCGCCGAAATGGAAAAACACCG
CGTACAGTGGCTGATTCACGGTCACACCCACCGCCCGGCGGTGCATGAACTTTCCGCCAACGGCCAGCCCGCGTTCCGCG
TGGTGTTAGGCGCATGGCATCATGAAGGTTCAATGGTAAAAGTCACGCCGGATAACGTGGAGTTAATCGCCTTCCCCCTG
TAA

Upstream 100 bases:

>100_bases
TAGATAAAATCAAAGGCGTCGCCACTGGCCGTAGCGGTATGCACCAGGACGTACCAAAAGAAGACGTCATCATTGAAAAC
GTGACCGTCAGCGAGTAATC

Downstream 100 bases:

>100_bases
ATGTTCGTCGAATCGTCCGTTACGGCGCACACGCAACCGTTTTCCTTGCCTGATTATCATGCTATTCTCTGACACCTCAA
AAGCAGCGTGTCCCGCACCA

Product: UDP-2,3-diacylglucosamine hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MATLFIADLHLQTEEPAIVAGFLRFLAVEARQADALYILGDLFEAWIGDDDPNPLHREMAVAIKSLVDSGVPCFFIHGNR
DFLIGKRFARESGMTLLPQEKVLDLYGRNVLIMHGDTLCTDDAGYQAFRAKVHNPWVQRPFLTLPLFIRRRIAARMRAGS
KAANSSKSLDIMDVNAQTVVAEMEKHRVQWLIHGHTHRPAVHELSANGQPAFRVVLGAWHHEGSMVKVTPDNVELIAFPL

Sequences:

>Translated_240_residues
MATLFIADLHLQTEEPAIVAGFLRFLAVEARQADALYILGDLFEAWIGDDDPNPLHREMAVAIKSLVDSGVPCFFIHGNR
DFLIGKRFARESGMTLLPQEKVLDLYGRNVLIMHGDTLCTDDAGYQAFRAKVHNPWVQRPFLTLPLFIRRRIAARMRAGS
KAANSSKSLDIMDVNAQTVVAEMEKHRVQWLIHGHTHRPAVHELSANGQPAFRVVLGAWHHEGSMVKVTPDNVELIAFPL
>Mature_239_residues
ATLFIADLHLQTEEPAIVAGFLRFLAVEARQADALYILGDLFEAWIGDDDPNPLHREMAVAIKSLVDSGVPCFFIHGNRD
FLIGKRFARESGMTLLPQEKVLDLYGRNVLIMHGDTLCTDDAGYQAFRAKVHNPWVQRPFLTLPLFIRRRIAARMRAGSK
AANSSKSLDIMDVNAQTVVAEMEKHRVQWLIHGHTHRPAVHELSANGQPAFRVVLGAWHHEGSMVKVTPDNVELIAFPL

Specific function: Catalyzes the hydrolysis of the pyrophosphate bond of UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1- phosphate (lipid X) and UMP [H]

COG id: COG2908

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lpxH family [H]

Homologues:

Organism=Escherichia coli, GI1786735, Length=240, Percent_Identity=84.1666666666667, Blast_Score=421, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004843
- InterPro:   IPR010138 [H]

Pfam domain/function: PF00149 Metallophos [H]

EC number: 3.6.1.-

Molecular weight: Translated: 26892; Mature: 26761

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLFIADLHLQTEEPAIVAGFLRFLAVEARQADALYILGDLFEAWIGDDDPNPLHREMA
CCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHH
VAIKSLVDSGVPCFFIHGNRDFLIGKRFARESGMTLLPQEKVLDLYGRNVLIMHGDTLCT
HHHHHHHHCCCCEEEEECCCEEEEEHHHHHCCCCEECCHHHHHHHHCCEEEEEECCEEEC
DDAGYQAFRAKVHNPWVQRPFLTLPLFIRRRIAARMRAGSKAANSSKSLDIMDVNAQTVV
CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHH
AEMEKHRVQWLIHGHTHRPAVHELSANGQPAFRVVLGAWHHEGSMVKVTPDNVELIAFPL
HHHHHHHEEEEEECCCCCCHHHCCCCCCCCEEEEEEEEEECCCCEEEECCCCEEEEEECC
>Mature Secondary Structure 
ATLFIADLHLQTEEPAIVAGFLRFLAVEARQADALYILGDLFEAWIGDDDPNPLHREMA
CEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHH
VAIKSLVDSGVPCFFIHGNRDFLIGKRFARESGMTLLPQEKVLDLYGRNVLIMHGDTLCT
HHHHHHHHCCCCEEEEECCCEEEEEHHHHHCCCCEECCHHHHHHHHCCEEEEEECCEEEC
DDAGYQAFRAKVHNPWVQRPFLTLPLFIRRRIAARMRAGSKAANSSKSLDIMDVNAQTVV
CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHH
AEMEKHRVQWLIHGHTHRPAVHELSANGQPAFRVVLGAWHHEGSMVKVTPDNVELIAFPL
HHHHHHHEEEEEECCCCCCHHHCCCCCCCCEEEEEEEEEECCCCEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA