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The map label for this gene is yqiR [H]

Identifier: 29142616

GI number: 29142616

Start: 2279849

End: 2281777

Strand: Reverse

Name: yqiR [H]

Synonym: t2215

Alternate gene names: 29142616

Gene position: 2281777-2279849 (Counterclockwise)

Preceding gene: 29142617

Following gene: 29142615

Centisome position: 47.62

GC content: 49.82

Gene sequence:

>1929_bases
ATGAATAAGACGAAAGATATAGCCGCATCTCCTCTCTGTTTTGTCTCTCCTTATCCGCAACTGGCAAAGGCTGCCGAGGC
GCTGGTCGCGCAGTTGGATTACGCCGTCACTATTCATCAAACGACGCTTAATCGTATCCTGGATGAGCTACCTTTATTAG
AGTCCCGTGGGCACCAGGTACTGATTAGTCGTGGCGGCTGTGCGGAAATATTAAAAAAGCACAGTAAATTACCGGTAGTC
GAAATTAAAATGTCCGGCTACGACATTCTTGATGCGCTTATCCCTTTTAAAGGACAAAAAGGCACTGTCGGTATTGTCGG
CTTTTCCAGTGTGATCAAAGGATGCGCGCGCGTAGCGGAACAGTTAAATATTAACTATAAAATTTTTACCTTACAGGGAA
ATGATAAAGAAACGATTTCTTGCCTGAAGCGGCAATTAGCGTCCACGCCATTAGATTGCATTGTTGGCGATACCGTTTGT
CAGGATTATTTTTCACCGCTGGGCTCGCAATTCCGTTTACTTGATTCCAGCCCCGCCTCAATAACCGAAGCTCTGGAAGA
AGCCCGCTCATTATATCTGGCTTTTCGCAGCCAATTACTGGAGCGCCATCATCTGCAGCTGATTCTCGATCAGTTTGATA
AAGCTGTTATCACGCTTGATGATACCGGCGCGTTACTGCATTACAATAAATATGCGAGCCAACTTTTTAAAATTAACGCC
TCCGGTGAAATTTATGACGCATCTTTCCTGAAACAGGTATTGCACCAGGAGCGGCATACATTACGTGAGGGAAAAACCGT
CAGCGCGAAAGTCGTCGATACACCGCAAGGCGCGATGGTAGTTAATCTGTATCCGGTATTTGCGGCCAGACAGTTAAGCC
GGGTGGTGTTGACGATGCAAACCGTCTCCAGTTTACAGGGGGCGGAACATCATGTTCGCCGCCAGGAACTGTCTCGCCGC
GGCTTGAGCGCCCGCTATCATTTCGACGATCTGCTTACCGAAAACCCGGAAATGCTGCGTCGTCTGGCGATCATTAAAAA
TTATGCCGGTACGGACGCGACTATCTTAATTAATGGCGAAAGCGGGACGGGAAAAGAGGTGCTGGCGCAAAGTATTCATA
ATGCCAGCCAACGCGTCAACGGCCTGTTTGTCGCCATTAACTGCGGCGCGATGGCCACTCAGATTCTGGAGAGCGAACTC
TTTGGCTATGTCGCCGGCGCATTTACCGGCGCGTCGCCGAAAGGCAAAATAGGCCTGTTTGAATTAGCGCACCACGGTAC
CATTTTTCTGGATGAGATTAGCGAACTGGATAAACCGCTACAGACGCGCTTATTACGGGTATTGCAGGAGCGGCAGATTA
TGCGGCTGGGCTCAGACCAGATGATACCTGTTGATATTCGCGTGATTGCGGCGACCAATCAGACGTTAACGAAGCTCATT
GCGGATGGGACATTTCGCGAAGATCTTTATTATCGGCTTAACGTATTAAAAGTAACCACTATCCCGCTACGCAAACGTCC
GGAGGATATCAAAGCCATCGGCCTGTCGCTGCTTACTAGTTTCAGCCAGCATTATAAACGCCCGGCACTAACGTTAACCC
CGGCGCTGTGGCAGGAGCTTCAGCGCTTCGCCTGGCCCGGAAACGTCAGGCAGTTAAGCAATATTATCGAACGGCTGGTG
CTCTCTATTGATCACTCCCCGGCAACTCTGGATGAGGGCCGCCTCTTGCTGGACGATTTGGAAGAGGGGAGCCGACGCGA
GCCAAGTACCTGCCACGACTGCCAGATGCTGGCTGGCGATTATAAAACGATTCGCCTGCGTATTTTGAGAAAATTATTAG
AGGCGGAAAGGGATAATAAATCGTTAGTGGCGAAACGGTTAAATGTCGATCGTACCTCGCTGACGCGCTGGATACGCGAG
TCGGCCTGA

Upstream 100 bases:

>100_bases
CGTAAACTGAACCCAGCCGCCGCAGGCGGTTAGCGTTTCGGCGGAAAATAAATCACGACGGGCGGTCTCGCCCGTTTATA
AACCAACAGGATGGTGAGTG

Downstream 100 bases:

>100_bases
CAAGAATTTACAGACTCTGTGGGCAGCCTTGCAAAGCGTAACGCAAATAACGTCTATTATTATAGGCAGTTAACGATCCA
AGAGGTGAAGTGATGAACAA

Product: sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MNKTKDIAASPLCFVSPYPQLAKAAEALVAQLDYAVTIHQTTLNRILDELPLLESRGHQVLISRGGCAEILKKHSKLPVV
EIKMSGYDILDALIPFKGQKGTVGIVGFSSVIKGCARVAEQLNINYKIFTLQGNDKETISCLKRQLASTPLDCIVGDTVC
QDYFSPLGSQFRLLDSSPASITEALEEARSLYLAFRSQLLERHHLQLILDQFDKAVITLDDTGALLHYNKYASQLFKINA
SGEIYDASFLKQVLHQERHTLREGKTVSAKVVDTPQGAMVVNLYPVFAARQLSRVVLTMQTVSSLQGAEHHVRRQELSRR
GLSARYHFDDLLTENPEMLRRLAIIKNYAGTDATILINGESGTGKEVLAQSIHNASQRVNGLFVAINCGAMATQILESEL
FGYVAGAFTGASPKGKIGLFELAHHGTIFLDEISELDKPLQTRLLRVLQERQIMRLGSDQMIPVDIRVIAATNQTLTKLI
ADGTFREDLYYRLNVLKVTTIPLRKRPEDIKAIGLSLLTSFSQHYKRPALTLTPALWQELQRFAWPGNVRQLSNIIERLV
LSIDHSPATLDEGRLLLDDLEEGSRREPSTCHDCQMLAGDYKTIRLRILRKLLEAERDNKSLVAKRLNVDRTSLTRWIRE
SA

Sequences:

>Translated_642_residues
MNKTKDIAASPLCFVSPYPQLAKAAEALVAQLDYAVTIHQTTLNRILDELPLLESRGHQVLISRGGCAEILKKHSKLPVV
EIKMSGYDILDALIPFKGQKGTVGIVGFSSVIKGCARVAEQLNINYKIFTLQGNDKETISCLKRQLASTPLDCIVGDTVC
QDYFSPLGSQFRLLDSSPASITEALEEARSLYLAFRSQLLERHHLQLILDQFDKAVITLDDTGALLHYNKYASQLFKINA
SGEIYDASFLKQVLHQERHTLREGKTVSAKVVDTPQGAMVVNLYPVFAARQLSRVVLTMQTVSSLQGAEHHVRRQELSRR
GLSARYHFDDLLTENPEMLRRLAIIKNYAGTDATILINGESGTGKEVLAQSIHNASQRVNGLFVAINCGAMATQILESEL
FGYVAGAFTGASPKGKIGLFELAHHGTIFLDEISELDKPLQTRLLRVLQERQIMRLGSDQMIPVDIRVIAATNQTLTKLI
ADGTFREDLYYRLNVLKVTTIPLRKRPEDIKAIGLSLLTSFSQHYKRPALTLTPALWQELQRFAWPGNVRQLSNIIERLV
LSIDHSPATLDEGRLLLDDLEEGSRREPSTCHDCQMLAGDYKTIRLRILRKLLEAERDNKSLVAKRLNVDRTSLTRWIRE
SA
>Mature_642_residues
MNKTKDIAASPLCFVSPYPQLAKAAEALVAQLDYAVTIHQTTLNRILDELPLLESRGHQVLISRGGCAEILKKHSKLPVV
EIKMSGYDILDALIPFKGQKGTVGIVGFSSVIKGCARVAEQLNINYKIFTLQGNDKETISCLKRQLASTPLDCIVGDTVC
QDYFSPLGSQFRLLDSSPASITEALEEARSLYLAFRSQLLERHHLQLILDQFDKAVITLDDTGALLHYNKYASQLFKINA
SGEIYDASFLKQVLHQERHTLREGKTVSAKVVDTPQGAMVVNLYPVFAARQLSRVVLTMQTVSSLQGAEHHVRRQELSRR
GLSARYHFDDLLTENPEMLRRLAIIKNYAGTDATILINGESGTGKEVLAQSIHNASQRVNGLFVAINCGAMATQILESEL
FGYVAGAFTGASPKGKIGLFELAHHGTIFLDEISELDKPLQTRLLRVLQERQIMRLGSDQMIPVDIRVIAATNQTLTKLI
ADGTFREDLYYRLNVLKVTTIPLRKRPEDIKAIGLSLLTSFSQHYKRPALTLTPALWQELQRFAWPGNVRQLSNIIERLV
LSIDHSPATLDEGRLLLDDLEEGSRREPSTCHDCQMLAGDYKTIRLRILRKLLEAERDNKSLVAKRLNVDRTSLTRWIRE
SA

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=358, Percent_Identity=37.7094972067039, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI1786524, Length=381, Percent_Identity=38.8451443569554, Blast_Score=227, Evalue=2e-60,
Organism=Escherichia coli, GI1788905, Length=308, Percent_Identity=42.2077922077922, Blast_Score=227, Evalue=2e-60,
Organism=Escherichia coli, GI1789233, Length=234, Percent_Identity=47.008547008547, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI87082117, Length=258, Percent_Identity=45.7364341085271, Blast_Score=216, Evalue=5e-57,
Organism=Escherichia coli, GI1789087, Length=312, Percent_Identity=40.7051282051282, Blast_Score=213, Evalue=4e-56,
Organism=Escherichia coli, GI1790437, Length=231, Percent_Identity=44.1558441558442, Blast_Score=201, Evalue=2e-52,
Organism=Escherichia coli, GI1790299, Length=232, Percent_Identity=44.3965517241379, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI1787583, Length=365, Percent_Identity=33.6986301369863, Blast_Score=182, Evalue=5e-47,
Organism=Escherichia coli, GI87082152, Length=227, Percent_Identity=42.2907488986784, Blast_Score=178, Evalue=1e-45,
Organism=Escherichia coli, GI87081872, Length=262, Percent_Identity=38.1679389312977, Blast_Score=167, Evalue=3e-42,
Organism=Escherichia coli, GI87081858, Length=385, Percent_Identity=29.6103896103896, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1789828, Length=311, Percent_Identity=33.1189710610932, Blast_Score=136, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 71759; Mature: 71759

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTKDIAASPLCFVSPYPQLAKAAEALVAQLDYAVTIHQTTLNRILDELPLLESRGHQV
CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHCCHHHCCCCEE
LISRGGCAEILKKHSKLPVVEIKMSGYDILDALIPFKGQKGTVGIVGFSSVIKGCARVAE
EEECCCHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH
QLNINYKIFTLQGNDKETISCLKRQLASTPLDCIVGDTVCQDYFSPLGSQFRLLDSSPAS
HHCCCEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHH
ITEALEEARSLYLAFRSQLLERHHLQLILDQFDKAVITLDDTGALLHYNKYASQLFKINA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEHHHHHHHEEECC
SGEIYDASFLKQVLHQERHTLREGKTVSAKVVDTPQGAMVVNLYPVFAARQLSRVVLTMQ
CCCEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHH
TVSSLQGAEHHVRRQELSRRGLSARYHFDDLLTENPEMLRRLAIIKNYAGTDATILINGE
HHHHHCCHHHHHHHHHHHHCCCCCEECHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECC
SGTGKEVLAQSIHNASQRVNGLFVAINCGAMATQILESELFGYVAGAFTGASPKGKIGLF
CCCCHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHE
ELAHHGTIFLDEISELDKPLQTRLLRVLQERQIMRLGSDQMIPVDIRVIAATNQTLTKLI
EECCCCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHHHH
ADGTFREDLYYRLNVLKVTTIPLRKRPEDIKAIGLSLLTSFSQHYKRPALTLTPALWQEL
HCCCHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHH
QRFAWPGNVRQLSNIIERLVLSIDHSPATLDEGRLLLDDLEEGSRREPSTCHDCQMLAGD
HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCC
YKTIRLRILRKLLEAERDNKSLVAKRLNVDRTSLTRWIRESA
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNKTKDIAASPLCFVSPYPQLAKAAEALVAQLDYAVTIHQTTLNRILDELPLLESRGHQV
CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHCCHHHCCCCEE
LISRGGCAEILKKHSKLPVVEIKMSGYDILDALIPFKGQKGTVGIVGFSSVIKGCARVAE
EEECCCHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH
QLNINYKIFTLQGNDKETISCLKRQLASTPLDCIVGDTVCQDYFSPLGSQFRLLDSSPAS
HHCCCEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHH
ITEALEEARSLYLAFRSQLLERHHLQLILDQFDKAVITLDDTGALLHYNKYASQLFKINA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEHHHHHHHEEECC
SGEIYDASFLKQVLHQERHTLREGKTVSAKVVDTPQGAMVVNLYPVFAARQLSRVVLTMQ
CCCEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHH
TVSSLQGAEHHVRRQELSRRGLSARYHFDDLLTENPEMLRRLAIIKNYAGTDATILINGE
HHHHHCCHHHHHHHHHHHHCCCCCEECHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECC
SGTGKEVLAQSIHNASQRVNGLFVAINCGAMATQILESELFGYVAGAFTGASPKGKIGLF
CCCCHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHE
ELAHHGTIFLDEISELDKPLQTRLLRVLQERQIMRLGSDQMIPVDIRVIAATNQTLTKLI
EECCCCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHHHH
ADGTFREDLYYRLNVLKVTTIPLRKRPEDIKAIGLSLLTSFSQHYKRPALTLTPALWQEL
HCCCHHHHHHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHH
QRFAWPGNVRQLSNIIERLVLSIDHSPATLDEGRLLLDDLEEGSRREPSTCHDCQMLAGD
HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCC
YKTIRLRILRKLLEAERDNKSLVAKRLNVDRTSLTRWIRESA
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]