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The map label for this gene is phrB [H]

Identifier: 29142576

GI number: 29142576

Start: 2229355

End: 2230776

Strand: Reverse

Name: phrB [H]

Synonym: t2167

Alternate gene names: 29142576

Gene position: 2230776-2229355 (Counterclockwise)

Preceding gene: 29142577

Following gene: 29142574

Centisome position: 46.55

GC content: 56.75

Gene sequence:

>1422_bases
ATGCCCACCCATTTAGTCTGGTTCAGGCGCGATCTGCGTTTACAGGATAACCTTGCGCTGGCCGCCGCCTGCCGCGATGC
ATCCGCGCGGGTGCTGGCGCTTTATATTTCCACCCCCGCCCAGTGGCAGGCCCATGATATGGCGCCGCGGCAGGCGGCAT
TCATCAGCGCGCAGCTCAATGCGCTACAGACGGCCCTTGCAGAGAAAGGGATTCCGCTGCTGTTTCATGAAGTGGCGGAT
TTTAACGCCAGTATTGAGACGGTTAAAAACGTTTGCCGGCAGCATGACGTCAGCCATCTGTTTTATAACTATCAGTATGA
GTTTAACGAGCGTCAGCGTGATGCGGCGGTGGAAAAAACGCTGCCATCTGTCATCTGCGAAGGCTTTGACGATAGCGTGA
TTCTGGCGCCCGGCGCGGTGATGACCGGCAATCATGAAATGTATAAAGTTTTTACGCCGTTTAAAAACGCCTGGTTGAAA
CGGCTAAAAGAGGATATCCCGCCGTGCGTTCCGGCCCCGAAGATCCGGGTGAGCGGCGCGCTTTCTATACCCTTAACGCC
AGTCTCGCTTAACTACCCGCAACAGGCGTTTGACGCCGCGCTTTTCCCGGTGGAAGAAAACGCGGTCATCGCGCAGCTAC
GTCATTTTTGCTCGCAGGGCGCAGACGAGTATGCGTCACGGCGCGATTTCCCTGCGGTTGACGGCACCAGTCGGCTTTCC
GCCAGCCTGGCGACGGGTGGCCTGTCGCCGCGACAGTGCCTGCACCGATTACTGGCGGAGCAGCCGCAGGCGCTGGACGG
CGGGCCGGGAAGCGTCTGGTTGAATGAGCTCATCTGGCGGGAATTTTACCGTCATTTAATGACCTGGTATCCGGCATTAT
GCAAACACCAGCCGTTTATCCGCTGGACAAAACGCGTCGCGTGGCAGGAGAACCCGCACTATTTTCAGGCATGGCAGAAA
GGCGAAACCGGTTATCCCATTGTCGATGCGGCGATGCGCCAGCTTAACGCGACGGGCTGGATGCATAACCGTTTACGCAT
GATTACCGCCAGCTTTCTGGTAAAAGATCTGCTAATTGACTGGCGGTTGGGGGAGCGCTATTTCATGTCGCAGCTTATTG
ACGGCGATCTTGCCGCCAATAATGGCGGCTGGCAGTGGGCCGCTTCAACCGGTACCGATGCCGCGCCTTATTTTCGTATT
TTTAATCCCACGACTCAGAGAGAGAGGTTCGATCGCGACGGCGAATTTATCCGCCAGTGGCTACCGGCATTACGCGATAT
ACCTGGAAAAGCGATTCACGAGCCGTGGCGGTGGGCGGAAAAAGCGGGAGTCGTACTTGATTATCCTCGGCCTATTGTGG
AGCACAAACAGGCGAGAATCGCAACGCTTTCCGCCTATGAGGCGGCGAGAAAAGGGGCGTGA

Upstream 100 bases:

>100_bases
CCTGAAAAACCGTCAGCCGCCACGCTGGCGGTTTTTTTATGCGCCAGGGTCTACACTGTTTAACGCTATTCGCCGTGACG
TTTCATCTTTCAGGAGTTGT

Downstream 100 bases:

>100_bases
TACAGGCCCGGTAGCGCAAACTACCGGGCCTTCTGCTATCAGGATTCGACGGCCAGCGCGCGGCTTTTGAATTTGAAGGA
CTGATACAGCCAAATCAGCA

Product: deoxyribodipyrimidine photolyase

Products: NA

Alternate protein names: DNA photolyase; Photoreactivating enzyme [H]

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLNALQTALAEKGIPLLFHEVAD
FNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKTLPSVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLK
RLKEDIPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRLS
ASLATGGLSPRQCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQK
GETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRI
FNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA

Sequences:

>Translated_473_residues
MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLNALQTALAEKGIPLLFHEVAD
FNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKTLPSVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLK
RLKEDIPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRLS
ASLATGGLSPRQCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQK
GETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRI
FNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA
>Mature_472_residues
PTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLNALQTALAEKGIPLLFHEVADF
NASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKTLPSVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKR
LKEDIPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRLSA
SLATGGLSPRQCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKG
ETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIF
NPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA

Specific function: Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ul

COG id: COG0415

COG function: function code L; Deoxyribodipyrimidine photolyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DNA photolyase domain [H]

Homologues:

Organism=Homo sapiens, GI188536100, Length=498, Percent_Identity=26.7068273092369, Blast_Score=143, Evalue=4e-34,
Organism=Homo sapiens, GI4758072, Length=492, Percent_Identity=25, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI188536103, Length=286, Percent_Identity=30.4195804195804, Blast_Score=125, Evalue=7e-29,
Organism=Escherichia coli, GI1786926, Length=472, Percent_Identity=78.8135593220339, Blast_Score=798, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6324962, Length=506, Percent_Identity=33.201581027668, Blast_Score=259, Evalue=4e-70,
Organism=Drosophila melanogaster, GI17137248, Length=504, Percent_Identity=27.3809523809524, Blast_Score=147, Evalue=1e-35,
Organism=Drosophila melanogaster, GI24585455, Length=504, Percent_Identity=27.3809523809524, Blast_Score=147, Evalue=1e-35,
Organism=Drosophila melanogaster, GI24648152, Length=526, Percent_Identity=24.3346007604563, Blast_Score=114, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002081
- InterPro:   IPR018394
- InterPro:   IPR006050
- InterPro:   IPR005101
- InterPro:   IPR014729 [H]

Pfam domain/function: PF00875 DNA_photolyase; PF03441 FAD_binding_7 [H]

EC number: =4.1.99.3 [H]

Molecular weight: Translated: 53786; Mature: 53655

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS00394 DNA_PHOTOLYASES_1_1 ; PS00691 DNA_PHOTOLYASES_1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN
CCCCEEEHHHCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCHHCCCCHHHHHHHHHHH
ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT
HHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCHHHEEEEEEECCHHHHHHHHHHH
LPSVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSGA
HHHHHHCCCCCCEEECCCEEEECCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCEEECCE
LSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRLS
EECCCCCEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHH
ASLATGGLSPRQCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKHQPFI
HHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
RWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLID
HHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
WRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIRQW
HHCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEECCCHHHHHCCCCHHHHHHH
LPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA
HHHHHCCCCHHHCCHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN
CCCEEEHHHCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCHHCCCCHHHHHHHHHHH
ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT
HHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCHHHEEEEEEECCHHHHHHHHHHH
LPSVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSGA
HHHHHHCCCCCCEEECCCEEEECCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCEEECCE
LSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRLS
EECCCCCEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHH
ASLATGGLSPRQCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKHQPFI
HHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
RWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLID
HHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
WRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIRQW
HHCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEECCCHHHHHCCCCHHHHHHH
LPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA
HHHHHCCCCHHHCCHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1840665; 11677609 [H]