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The map label for this gene is ybjK [H]

Identifier: 29142448

GI number: 29142448

Start: 2084072

End: 2084692

Strand: Reverse

Name: ybjK [H]

Synonym: t2027

Alternate gene names: 29142448

Gene position: 2084692-2084072 (Counterclockwise)

Preceding gene: 29142451

Following gene: 29142446

Centisome position: 43.5

GC content: 51.37

Gene sequence:

>621_bases
ATGAAAGAAAATGCCGTAAGACGCGCCAATGATCCTAAGCGACGGGAAAAAATAATTCAGGCCACACTGGAAGCGGTAAA
GACCTATGGCGTTCATGCCGTGACGCACCGGAAAATCGCCGCTATCGCTCAGGTGCCGCTTGGCTCGATGACCTACTATT
TTGCCGGTATGGATGCGTTATTGAGTGAAGCTTTTACACTTTTCACCGAGAACATGTCGCGTCAATACCAGGATTTTTTT
GCGCAGGTGACGGATGTGGAGGGGGCGTGCCAGGCGATAACGGAAATGATTTACGGCTCGCAGGTTACGACGCCGGATAA
TATGGCGTTAATGTATCAGTTATATGCCTATGCCAGCGATAAGCCAGCGTTAAAAATAGTCATGCAAAACTGGATGCAGC
GTAGCCAGAATACGCTGGCGCAGTGGTTTGACGCACAGACCGCCCGCGCGCTGGATGCGTTTATCGAGGGGATGACGCTG
CATTTTGTGACGGATCGAACGCCGTTGGCGCGTGAAGCGATTTTACAGATGGTAAAGCGAATAGCCGGAGAGTCAATGTC
GTGTCACTCTGCGTCGGGCAACAAAAAACCCACCAACCTTGAACCGAAATGGCGGGGTTGA

Upstream 100 bases:

>100_bases
TCGTCATACTTCGTTGTGCAGACAGTTTTTGCTGTCTGTTTTTTCAGCGTAAGCGGCAGGCTACTATCGCCTGCATCCTG
AATGAGATGTGGAACTCATC

Downstream 100 bases:

>100_bases
TGGGCTCCACAAAATGGGGACATCAAAGAAAAGCAGTGGCAATAGGTATGACTGATGCTTTAACGAAAAGTTCGACCTAT
TGGCAAAATTTTTTCACTTA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKENAVRRANDPKRREKIIQATLEAVKTYGVHAVTHRKIAAIAQVPLGSMTYYFAGMDALLSEAFTLFTENMSRQYQDFF
AQVTDVEGACQAITEMIYGSQVTTPDNMALMYQLYAYASDKPALKIVMQNWMQRSQNTLAQWFDAQTARALDAFIEGMTL
HFVTDRTPLAREAILQMVKRIAGESMSCHSASGNKKPTNLEPKWRG

Sequences:

>Translated_206_residues
MKENAVRRANDPKRREKIIQATLEAVKTYGVHAVTHRKIAAIAQVPLGSMTYYFAGMDALLSEAFTLFTENMSRQYQDFF
AQVTDVEGACQAITEMIYGSQVTTPDNMALMYQLYAYASDKPALKIVMQNWMQRSQNTLAQWFDAQTARALDAFIEGMTL
HFVTDRTPLAREAILQMVKRIAGESMSCHSASGNKKPTNLEPKWRG
>Mature_206_residues
MKENAVRRANDPKRREKIIQATLEAVKTYGVHAVTHRKIAAIAQVPLGSMTYYFAGMDALLSEAFTLFTENMSRQYQDFF
AQVTDVEGACQAITEMIYGSQVTTPDNMALMYQLYAYASDKPALKIVMQNWMQRSQNTLAQWFDAQTARALDAFIEGMTL
HFVTDRTPLAREAILQMVKRIAGESMSCHSASGNKKPTNLEPKWRG

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787069, Length=178, Percent_Identity=78.0898876404494, Blast_Score=295, Evalue=1e-81,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23243; Mature: 23243

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKENAVRRANDPKRREKIIQATLEAVKTYGVHAVTHRKIAAIAQVPLGSMTYYFAGMDAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LSEAFTLFTENMSRQYQDFFAQVTDVEGACQAITEMIYGSQVTTPDNMALMYQLYAYASD
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
KPALKIVMQNWMQRSQNTLAQWFDAQTARALDAFIEGMTLHFVTDRTPLAREAILQMVKR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
IAGESMSCHSASGNKKPTNLEPKWRG
HHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKENAVRRANDPKRREKIIQATLEAVKTYGVHAVTHRKIAAIAQVPLGSMTYYFAGMDAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LSEAFTLFTENMSRQYQDFFAQVTDVEGACQAITEMIYGSQVTTPDNMALMYQLYAYASD
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
KPALKIVMQNWMQRSQNTLAQWFDAQTARALDAFIEGMTLHFVTDRTPLAREAILQMVKR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
IAGESMSCHSASGNKKPTNLEPKWRG
HHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]