Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
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Accession | NC_004631 |
Length | 4,791,961 |
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The map label for this gene is rumB [H]
Identifier: 29142435
GI number: 29142435
Start: 2072424
End: 2073551
Strand: Reverse
Name: rumB [H]
Synonym: t2014
Alternate gene names: 29142435
Gene position: 2073551-2072424 (Counterclockwise)
Preceding gene: 29142436
Following gene: 29142434
Centisome position: 43.27
GC content: 56.21
Gene sequence:
>1128_bases ATGCAGTGCGCACTCTATGACGCGGGTCGCTGCCGTTCCTGTCAATGGATTACGCAGTCGGTTAACGAACAACTTTCCGC AAAAACAGCCGATTTACATCGTTTGCTGGCCGGGCTGCCTGTTGAACAGTGGTGCGCGCCGATTAGCGGCCCGGAACAGC ATTTCCGCAACAAAGCGAAAATGGTCGTGAGCGGTAGTGTAGAAAAACCGCTCTTCGGGATGCTGCATCGCGACGGTACG CCGGTCGATCTTTGCGCTTGCCCGCTGTATCCCGCCTCCTTTGCCCCCGTATTCAGCGCGCTAAAACCTTTTATTGCCCG TGCCGGACTCACGCCTTATAACGTGGCGCGAAAACGCGGCGAACTGAAATACCTGTTGCTGACGGAAAGTCAGTTCGATG GCGGCATGATGCTACGCTTCGTGTTGCGTTCAGAAACCAAACTTACGCAACTGCGCGCGGCGTTACCGTGGCTGCGCGCG CAACTGCCGCAGCTCAGAGTGATCACCGCGAATATCCAGCCGGTACATATGGCGATTATGGAAGGGGAGACGGAAATCTA TCTGACGGATCAGCAGGCGCTGGCGGAACGTTTTAACGATGTGCCGCTGTGGATTCGTCCGCAAAGTTTCTTTCAGACCA ACCCTACGGTCGCCAGCCGATTATATGCGACGGCGCGCGACTGGGTAGGGCAATTGCCGGTACGCCATATGTGGGATCTT TTTTGCGGAGTGGGCGGATTCGGCCTGCACTGCGCGACGCCGCAGATGCAATTAACCGGTATTGAGATCGCGCCGGAGGC GATTGCCTGCGCGAAGCAATCCGCTGCCGAGCTGGGATTAACCCGCCTTCATTTCCAGGCGCTGGATTCCACCCAATTCG CCACCGCACAAGGCGAAACGCCCGATCTGGTGTTGGTGAATCCTCCCCGCCGCGGCATTGGCAAGCCGTTGTGCGATTAC CTTGCACAAATGGCGCCGCGTTTTATCATTTATTCGAGCTGTAACGCGCAGACGATGGCGCAGGATATTCGCCATCTGCC GAACTACCGTATTCAACGTGTTCAGCTTTTCGATATGTTCCCCCATACCGCGCATTATGAAGTGTTAACACTGCTTTGCA GGCTGTAG
Upstream 100 bases:
>100_bases AATTCTGTTTCTGCTGTTTATTCCCGCTCCCAGCCGTCGGTTCTTCCGGCTGCAATAATGTGTATAATCGTCACCCCGGA TAATATGAAGGTTTTTTGGT
Downstream 100 bases:
>100_bases CGCCAAAAGCCAAGCATACAAAATATCTATATTAACTGTCTAATTATCCATAAATAATAATAACCATGATCGATCGATGA AAAACTCCGATCGATCATGG
Product: 23S rRNA methyluridine methyltransferase
Products: NA
Alternate protein names: 23S rRNA(M-5-U747)-methyltransferase [H]
Number of amino acids: Translated: 375; Mature: 375
Protein sequence:
>375_residues MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLFGMLHRDGT PVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRA QLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGETPDLVLVNPPRRGIGKPLCDY LAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMFPHTAHYEVLTLLCRL
Sequences:
>Translated_375_residues MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLFGMLHRDGT PVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRA QLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGETPDLVLVNPPRRGIGKPLCDY LAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMFPHTAHYEVLTLLCRL >Mature_375_residues MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLFGMLHRDGT PVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRA QLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGETPDLVLVNPPRRGIGKPLCDY LAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMFPHTAHYEVLTLLCRL
Specific function: Catalyzes the formation of 5-methyl-uridine at position 747 (M-5-U747) in 23S rRNA [H]
COG id: COG2265
COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family. RumB subfamily [H]
Homologues:
Organism=Homo sapiens, GI34222389, Length=371, Percent_Identity=23.989218328841, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI51173878, Length=371, Percent_Identity=23.989218328841, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1787083, Length=374, Percent_Identity=88.2352941176471, Blast_Score=693, Evalue=0.0, Organism=Escherichia coli, GI1789148, Length=384, Percent_Identity=27.0833333333333, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1790403, Length=382, Percent_Identity=23.5602094240838, Blast_Score=65, Evalue=5e-12, Organism=Drosophila melanogaster, GI24666579, Length=367, Percent_Identity=24.7956403269755, Blast_Score=73, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011825 - InterPro: IPR010280 [H]
Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]
EC number: =2.1.1.189 [H]
Molecular weight: Translated: 42070; Mature: 42070
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: PS01230 TRMA_1 ; PS01231 TRMA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAK CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHCHHE MVVSGSVEKPLFGMLHRDGTPVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRG EEEECCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCC ELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIM CEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEE EGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL CCCEEEEEECHHHHHHHHCCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET HHCCCCCCEEECCCCEEEECEEECHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCC PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMF CCEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCC PHTAHYEVLTLLCRL CCCHHHHHHHHHHCC >Mature Secondary Structure MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAK CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHCHHE MVVSGSVEKPLFGMLHRDGTPVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRG EEEECCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCC ELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIM CEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEE EGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL CCCEEEEEECHHHHHHHHCCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET HHCCCCCCEEECCCCEEEECEEECHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCC PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMF CCEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCC PHTAHYEVLTLLCRL CCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA