Definition Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome.
Accession NC_004631
Length 4,791,961

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The map label for this gene is rumB [H]

Identifier: 29142435

GI number: 29142435

Start: 2072424

End: 2073551

Strand: Reverse

Name: rumB [H]

Synonym: t2014

Alternate gene names: 29142435

Gene position: 2073551-2072424 (Counterclockwise)

Preceding gene: 29142436

Following gene: 29142434

Centisome position: 43.27

GC content: 56.21

Gene sequence:

>1128_bases
ATGCAGTGCGCACTCTATGACGCGGGTCGCTGCCGTTCCTGTCAATGGATTACGCAGTCGGTTAACGAACAACTTTCCGC
AAAAACAGCCGATTTACATCGTTTGCTGGCCGGGCTGCCTGTTGAACAGTGGTGCGCGCCGATTAGCGGCCCGGAACAGC
ATTTCCGCAACAAAGCGAAAATGGTCGTGAGCGGTAGTGTAGAAAAACCGCTCTTCGGGATGCTGCATCGCGACGGTACG
CCGGTCGATCTTTGCGCTTGCCCGCTGTATCCCGCCTCCTTTGCCCCCGTATTCAGCGCGCTAAAACCTTTTATTGCCCG
TGCCGGACTCACGCCTTATAACGTGGCGCGAAAACGCGGCGAACTGAAATACCTGTTGCTGACGGAAAGTCAGTTCGATG
GCGGCATGATGCTACGCTTCGTGTTGCGTTCAGAAACCAAACTTACGCAACTGCGCGCGGCGTTACCGTGGCTGCGCGCG
CAACTGCCGCAGCTCAGAGTGATCACCGCGAATATCCAGCCGGTACATATGGCGATTATGGAAGGGGAGACGGAAATCTA
TCTGACGGATCAGCAGGCGCTGGCGGAACGTTTTAACGATGTGCCGCTGTGGATTCGTCCGCAAAGTTTCTTTCAGACCA
ACCCTACGGTCGCCAGCCGATTATATGCGACGGCGCGCGACTGGGTAGGGCAATTGCCGGTACGCCATATGTGGGATCTT
TTTTGCGGAGTGGGCGGATTCGGCCTGCACTGCGCGACGCCGCAGATGCAATTAACCGGTATTGAGATCGCGCCGGAGGC
GATTGCCTGCGCGAAGCAATCCGCTGCCGAGCTGGGATTAACCCGCCTTCATTTCCAGGCGCTGGATTCCACCCAATTCG
CCACCGCACAAGGCGAAACGCCCGATCTGGTGTTGGTGAATCCTCCCCGCCGCGGCATTGGCAAGCCGTTGTGCGATTAC
CTTGCACAAATGGCGCCGCGTTTTATCATTTATTCGAGCTGTAACGCGCAGACGATGGCGCAGGATATTCGCCATCTGCC
GAACTACCGTATTCAACGTGTTCAGCTTTTCGATATGTTCCCCCATACCGCGCATTATGAAGTGTTAACACTGCTTTGCA
GGCTGTAG

Upstream 100 bases:

>100_bases
AATTCTGTTTCTGCTGTTTATTCCCGCTCCCAGCCGTCGGTTCTTCCGGCTGCAATAATGTGTATAATCGTCACCCCGGA
TAATATGAAGGTTTTTTGGT

Downstream 100 bases:

>100_bases
CGCCAAAAGCCAAGCATACAAAATATCTATATTAACTGTCTAATTATCCATAAATAATAATAACCATGATCGATCGATGA
AAAACTCCGATCGATCATGG

Product: 23S rRNA methyluridine methyltransferase

Products: NA

Alternate protein names: 23S rRNA(M-5-U747)-methyltransferase [H]

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLFGMLHRDGT
PVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRA
QLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL
FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGETPDLVLVNPPRRGIGKPLCDY
LAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMFPHTAHYEVLTLLCRL

Sequences:

>Translated_375_residues
MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLFGMLHRDGT
PVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRA
QLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL
FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGETPDLVLVNPPRRGIGKPLCDY
LAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMFPHTAHYEVLTLLCRL
>Mature_375_residues
MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLFGMLHRDGT
PVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRA
QLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL
FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGETPDLVLVNPPRRGIGKPLCDY
LAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMFPHTAHYEVLTLLCRL

Specific function: Catalyzes the formation of 5-methyl-uridine at position 747 (M-5-U747) in 23S rRNA [H]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family. RumB subfamily [H]

Homologues:

Organism=Homo sapiens, GI34222389, Length=371, Percent_Identity=23.989218328841, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI51173878, Length=371, Percent_Identity=23.989218328841, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1787083, Length=374, Percent_Identity=88.2352941176471, Blast_Score=693, Evalue=0.0,
Organism=Escherichia coli, GI1789148, Length=384, Percent_Identity=27.0833333333333, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790403, Length=382, Percent_Identity=23.5602094240838, Blast_Score=65, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24666579, Length=367, Percent_Identity=24.7956403269755, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011825
- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: =2.1.1.189 [H]

Molecular weight: Translated: 42070; Mature: 42070

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS01230 TRMA_1 ; PS01231 TRMA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAK
CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHCHHE
MVVSGSVEKPLFGMLHRDGTPVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRG
EEEECCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCC
ELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIM
CEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEE
EGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL
CCCEEEEEECHHHHHHHHCCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET
HHCCCCCCEEECCCCEEEECEEECHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCC
PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMF
CCEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCC
PHTAHYEVLTLLCRL
CCCHHHHHHHHHHCC
>Mature Secondary Structure
MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAK
CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHCHHE
MVVSGSVEKPLFGMLHRDGTPVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRG
EEEECCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCC
ELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIM
CEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEE
EGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL
CCCEEEEEECHHHHHHHHCCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET
HHCCCCCCEEECCCCEEEECEEECHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCC
PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMF
CCEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCC
PHTAHYEVLTLLCRL
CCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA