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The map label for this gene is intZ [C]

Identifier: 29142407

GI number: 29142407

Start: 2043456

End: 2043833

Strand: Direct

Name: intZ [C]

Synonym: t1986

Alternate gene names: 29142407

Gene position: 2043456-2043833 (Clockwise)

Preceding gene: 29142406

Following gene: 29142408

Centisome position: 42.64

GC content: 46.03

Gene sequence:

>378_bases
TTGCATAAGTATCTCTCGGTAGTAAAAAAGCACCGAGTTCCTCTGTCTGATGCTGCTGTTGATTTGTTAAAAGATTTACC
ACGATTAAAAGATAACAATCATGTATTCCCTGCCCCTCGCGCTGAAACACTTTCTGATATGTCGTTATTGGCTGTATTGA
AACGAATGGGATATATCGACTTAACGCAACATGGCTTCCGTTCTACTTTCCGTGAGTGGGCTGGTGAAGCAACGGATTAT
CAACGTGAGGTTATTGAACATGCGTTGGCGCACCAGTTGGCAGATAAGGCTGAAGCAGCGTATCAGCGTGGGACGTTATG
GCCTAAACGAGTGGCGCTGATGGATGACTGGACGGGGTATAGCACTGCCAACAGCTAA

Upstream 100 bases:

>100_bases
TGATGAAAGGTTTGTTTTTGGACCTTTGGTTGCTACACCAAACTTACTATAGATTGTGTAAAACAGCCCTACTTCCCTAC
CTGAAACGCTTTAGAAAAGT

Downstream 100 bases:

>100_bases
GCTACCTGTACGAAAGCATTATCGTTGATAACAACGTAGAAAGTGTGATGCTAATAGCATTCGCTTTCGAAAATGTGATA
AGGAATAATTTCACGATGAA

Product: integrase remnant

Products: NA

Alternate protein names: Integrase Family Protein; Phage Integrase Family Protein; Integrase; Phage-Related Integrase; Site-Specific Recombinase Phage Integrase Family Protein; Site-Specfic Recombinase Phage Integrase Family; Site-Specific Recombinase Phage Integrase Family; Prophage Integrase; Phage Integrase Family Site Specific Recombinase; Integrase Prophage Protein; CP4-Like Integrase; P4 Family Integrase; Symbiosis Island Integrase; Integrase DNA Protein; DNA Integration/Recombination/Inversion Protein; Prophage CP4-Like Integrase; Bacteriophage P4-Type Integrase; Bacteriophage P4 Integrase; P4-Family Integrase; Prophage P4 Integrase; Site-Specific Recombinase; Phage Integrase-Like Protein Contains Catalytic Core Domain; Transposase; Integrase Remnant; Site-Specfic Recombinase Phage Integrase Family Protein

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MHKYLSVVKKHRVPLSDAAVDLLKDLPRLKDNNHVFPAPRAETLSDMSLLAVLKRMGYIDLTQHGFRSTFREWAGEATDY
QREVIEHALAHQLADKAEAAYQRGTLWPKRVALMDDWTGYSTANS

Sequences:

>Translated_125_residues
MHKYLSVVKKHRVPLSDAAVDLLKDLPRLKDNNHVFPAPRAETLSDMSLLAVLKRMGYIDLTQHGFRSTFREWAGEATDY
QREVIEHALAHQLADKAEAAYQRGTLWPKRVALMDDWTGYSTANS
>Mature_125_residues
MHKYLSVVKKHRVPLSDAAVDLLKDLPRLKDNNHVFPAPRAETLSDMSLLAVLKRMGYIDLTQHGFRSTFREWAGEATDY
QREVIEHALAHQLADKAEAAYQRGTLWPKRVALMDDWTGYSTANS

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14264; Mature: 14264

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKYLSVVKKHRVPLSDAAVDLLKDLPRLKDNNHVFPAPRAETLSDMSLLAVLKRMGYID
CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
LTQHGFRSTFREWAGEATDYQREVIEHALAHQLADKAEAAYQRGTLWPKRVALMDDWTGY
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
STANS
CCCCC
>Mature Secondary Structure
MHKYLSVVKKHRVPLSDAAVDLLKDLPRLKDNNHVFPAPRAETLSDMSLLAVLKRMGYID
CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
LTQHGFRSTFREWAGEATDYQREVIEHALAHQLADKAEAAYQRGTLWPKRVALMDDWTGY
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
STANS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA