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The map label for this gene is ycaJ [H]

Identifier: 29142394

GI number: 29142394

Start: 2027028

End: 2028371

Strand: Reverse

Name: ycaJ [H]

Synonym: t1972

Alternate gene names: 29142394

Gene position: 2028371-2027028 (Counterclockwise)

Preceding gene: 29142395

Following gene: 29142393

Centisome position: 42.33

GC content: 56.85

Gene sequence:

>1344_bases
GTGAGCAATCTGTCGCTCGATTTTTCTGATAATACGTTTCAACCGCTGGCCGCGCGAATGCGGCCGGAAAATTTAGCACA
GTATATCGGCCAGCAGCATTTGCTGGCCGCAGGTAAGCCGTTGCCTCGCGCTATTGAGGCCGGGCATCTGCACTCCATGA
TTTTATGGGGGCCGCCAGGGACGGGGAAAACCACGCTCGCTGAAGTGATCGCCCGCTACGCCAGCGCCGATGTCGAGCGT
ATTTCCGCCGTCACTTCTGGGGTAAAAGAGATTCGCGAAGCTATCGAGCGCGCCCGCCAGAATCGTAATGCCGGTCGCCG
TACCATCCTGTTTGTCGATGAAGTGCATCGCTTTAACAAAAGCCAGCAGGACGCCTTTTTACCGCATATCGAAGATGGCA
CTATCACCTTTATCGGCGCGACCACGGAAAATCCCTCTTTTGAGCTGAACTCGGCGCTATTGTCGCGAGCGCGAGTCTAT
CTGCTGAAATCGTTGACTACTGACGATATTGAGCAAGTACTGGACCAGGCGATGCAGGACAAAACGCGTGGTTACGGCGA
TCAGGATATCGTGTTACCGGATGAGACACGGCGAGCGATTGCTGAGCTGGTCAATGGCGACGCGCGGCGCGCCTTAAATA
CGCTGGAAATGATGGCTGATATGGCGGAGGCGGATGACAGCGGCAAACGCGTTTTATTGCCCGCCTTGTTGACCGAGATC
GCCGGCGAGCGCAGCGCGCGTTTTGATAACAAAGGCGATCGCTTCTACGATCTTATTTCCGCCTTACATAAATCAGTGCG
CGGCAGCGCGCCGGATGCCGCCCTCTATTGGTATGCCCGTATCATTACCGCGGGAGGCGATCCGCTGTACGTGGCGCGTC
GCTGCCTGGCGATTGCCTCGGAAGATGTGGGTAATGCCGATCCTCGCGCGATGCAGGTCGCCATTGCCGCGTGGGATTGT
TTCACCCGCGTCGGCCCGGCTGAAGGCGAAAGGGCGATCGCGCAGGCTATCGTTTATCTCGCCTGCGCGCCGAAGAGCAA
CGCCGTCTATACCGCCTTTAAGGCTGCGCTGGCCGACGCGCGCGAACGTCCTGATTATGACGTTCCTGTCCATCTGCGTA
ATGCGCCAACCAAACTGATGAAAGAGATGGGCTATGGCCAGGAATACCGCTATGCCCACGATGAGCCCAATGCCTATGCT
GCGGGTGAAGTGTACTTCCCGCCGGAAATCGCGCAAACGCGCTATTATCATCCGACAAATCGTGGTCTGGAAGGTAAGAT
TGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCACAAAACGCTACCGCTAG

Upstream 100 bases:

>100_bases
GCTAAAATCCCAGCAAAACGGCGCTGTTGAACCGTCAAAATTTACGTTTACTCCGCCGCAAGGGGTAACGATAGACGACC
AACGTAAGTAGAGGCGATGA

Downstream 100 bases:

>100_bases
TGTAAACGTTGCGGTAAGGTTATCTCTAAATATGATGCTCCAGGTATCATGGCGTTGATGATGAACCTCGTTATGCCTGA
TAGCACGTTGCTTATGAGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYASADVER
ISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTEI
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYA
AGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR

Sequences:

>Translated_447_residues
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYASADVER
ISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTEI
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYA
AGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR
>Mature_446_residues
SNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYASADVERI
SAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYL
LKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTEIA
GERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCF
TRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAA
GEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=40.9090909090909, Blast_Score=302, Evalue=4e-82,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=36.3636363636364, Blast_Score=243, Evalue=3e-64,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=97.3154362416107, Blast_Score=894, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6324111, Length=448, Percent_Identity=40.625, Blast_Score=305, Evalue=8e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=211, Percent_Identity=27.0142180094787, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49573; Mature: 49442

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG
CCCCEECCCCCCHHHHHHHCCHHHHHHHHCHHHHHHCCCCCCHHHHCCCCCEEEEECCCC
TGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQAMQD
CCCCCCCCEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTEI
HHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHH
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS
HCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH
RERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEVYFPPEIAQTRYYHPTN
HHCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCEECCEEECCCHHHHCCCCCCCC
RGLEGKIGEKLAWLAEQDQNSPTKRYR
CCCCCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG
CCCEECCCCCCHHHHHHHCCHHHHHHHHCHHHHHHCCCCCCHHHHCCCCCEEEEECCCC
TGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQAMQD
CCCCCCCCEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTEI
HHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHH
AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS
HCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH
RERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEVYFPPEIAQTRYYHPTN
HHCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCEECCEEECCCHHHHCCCCCCCC
RGLEGKIGEKLAWLAEQDQNSPTKRYR
CCCCCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]