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The map label for this gene is quuQ [H]

Identifier: 29142330

GI number: 29142330

Start: 1956593

End: 1957390

Strand: Reverse

Name: quuQ [H]

Synonym: t1904

Alternate gene names: 29142330

Gene position: 1957390-1956593 (Counterclockwise)

Preceding gene: 29142331

Following gene: 29142329

Centisome position: 40.85

GC content: 46.49

Gene sequence:

>798_bases
ATGAATCTTGAGTCCTTACCGAAATATTTTTCACCTAAATCCATGATGCCCGGCGCAGTACCATGCGGAATAACGTCTGA
TACGCTGACTATTACTGACGTAATGGCATCTCTCGGGCTACTTACTGCAAAAGCCGCAGTGGGTATTGAATTGTATCTGG
CAAAAGCCGGGGTTTTATCTTCTGAAAATATCATCGCCTACATCAGGCAATTAGCAGAGCAGCGTGCAGAACGGCATGGG
GCATTACGGAAAATGGAAAAGGGTAAGCGCTCAAAATTTCTCGACACTATGGCGCGTTATGTATTTCGCGATTATTCCCT
CAGTGCGGCCAGCTTGGTGACGTGCAGTAGCTGTCATGGTGCTAAATTAATTGATGCTGAGGTTTTCACGAACAAGGTTA
CTTACCCGGATGGTAAGCCACCAAAATGGGTAAAAGATACGAAAGGTATTTCTCCGTCCGACTGGGAGGTGTGGAAATCA
GTTCGTGAGCAGGTGCGCGTAGTGTGTAAGGCGTGTGATGGCAAAGGCCAGGTGAAAAATGAATGTCGTTGCCGGGGACG
CGGAGAAATTCTCGATAAGAAAAAATCTGAGTTGCAGGGCGTGCCGGTTTATAAAAAATGCCCAAGATGCAAGGGAAGAG
GCTACCCACGTCTCAAAGATACCGAGATTTTTAAAGCACTAGGAGTAACGGAAATGGTATGGCGGTACAACTATAAACTG
TTTTTCGATCGACTGGTGGAGCATTGCCATATTGAGGAGTCGTATGCAGAAAAGGTTCTGGGAAACGTGACTCGATGA

Upstream 100 bases:

>100_bases
TGGTTGCGTCTCCGAATTTATCGATACCGGGGATCTTTTCCTGTGGCATACCGCATTCTTCGTAATTACGTCCGCATTGA
AGCAAAACGGGAGCATCGAA

Downstream 100 bases:

>100_bases
CCAAAATAATTTAGCTATTGCAAAATTAACGGAAAATGGCTAACCTGATTCCAACGATGGGTTATTACGCCTGTGACGTT
ACAAGAATTAAGAACCTCGC

Product: prophage antitermination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MNLESLPKYFSPKSMMPGAVPCGITSDTLTITDVMASLGLLTAKAAVGIELYLAKAGVLSSENIIAYIRQLAEQRAERHG
ALRKMEKGKRSKFLDTMARYVFRDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKS
VREQVRVVCKACDGKGQVKNECRCRGRGEILDKKKSELQGVPVYKKCPRCKGRGYPRLKDTEIFKALGVTEMVWRYNYKL
FFDRLVEHCHIEESYAEKVLGNVTR

Sequences:

>Translated_265_residues
MNLESLPKYFSPKSMMPGAVPCGITSDTLTITDVMASLGLLTAKAAVGIELYLAKAGVLSSENIIAYIRQLAEQRAERHG
ALRKMEKGKRSKFLDTMARYVFRDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKS
VREQVRVVCKACDGKGQVKNECRCRGRGEILDKKKSELQGVPVYKKCPRCKGRGYPRLKDTEIFKALGVTEMVWRYNYKL
FFDRLVEHCHIEESYAEKVLGNVTR
>Mature_265_residues
MNLESLPKYFSPKSMMPGAVPCGITSDTLTITDVMASLGLLTAKAAVGIELYLAKAGVLSSENIIAYIRQLAEQRAERHG
ALRKMEKGKRSKFLDTMARYVFRDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKS
VREQVRVVCKACDGKGQVKNECRCRGRGEILDKKKSELQGVPVYKKCPRCKGRGYPRLKDTEIFKALGVTEMVWRYNYKL
FFDRLVEHCHIEESYAEKVLGNVTR

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 2 family [H]

Homologues:

Organism=Escherichia coli, GI87081935, Length=271, Percent_Identity=34.3173431734317, Blast_Score=138, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003222
- InterPro:   IPR001305 [H]

Pfam domain/function: PF03589 Antiterm [H]

EC number: NA

Molecular weight: Translated: 29817; Mature: 29817

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]