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The map label for this gene is ycfS [H]

Identifier: 29142139

GI number: 29142139

Start: 1772948

End: 1773739

Strand: Direct

Name: ycfS [H]

Synonym: t1705

Alternate gene names: 29142139

Gene position: 1772948-1773739 (Clockwise)

Preceding gene: 29142138

Following gene: 29142141

Centisome position: 37.0

GC content: 56.44

Gene sequence:

>792_bases
ATGTTCAACAATACGCGACTCTCTCGCTGGTGGGCGTTGCTTGCGCTTACCGCGACCATCATGCTTGCCCTTCCCGCGCA
GGCGAATACGTGGCCTCTTCCGCCCCCCGGCAGTCGACTGGTGGGAGAAAATAAATTCCATGTCGTTGAAGACGACGGCG
GCTCGCTGGAGGCGATCGCCAAAAAATATAACGTGGGCTTTTTAGCCCTGTTACAGGCCAACCCCGGCATTGATCCTTAC
GTGCCACGCGCAGGCAGCGTGCTGACGATTCCGCTGCAAACGCTGCTACCGGACGCGCCACGTGAAGGTATCGTCATTAA
CCTCGCTGAATTACGGCTTTACTATTATCAACCGGGGAAAAATACGGTCACGGTCTACCCTATCGGCATTGGCCAACTGG
GCGGCGATACCCTGACGCCAACGATGGTGACGACCATTTCGGATAAACGCGCCAATCCAACCTGGACGCCGACCACCAAT
ATTCGCGCCCGTTATAAAGCGCAAGGCATCGATCTCCCCGCCGTGGTGCCTGCCGGTCCCGATAACCCAATGGGGCATCA
CGCGATTCGTTTAGCGGCCTACGGCGGCGTCTATCTGTTACATGGCACGAATGCCGGTTTTGGCATTGGTATGCGCGTCA
GTTCCGGCTGTATCCGTCTGCGCGACGGTGATATAGAGACATTGTTCCGTCAAGTCACGCCGGGAACCAAAGTGAATATT
ATCAATACGCCGATTAAAGCCTCGGTGGAGCCAGGCGGCGTGCGACTGGTGGAAGTTCATCAGTCGCTGTAA

Upstream 100 bases:

>100_bases
ATTCTTTGCACTTCCCTGCAGTTCCAGACACAGCCAACCGCCATAATTCTTATTTCCTCTTTTATAAAAATAACCACATA
ATAATCATGGGCTTATTATA

Downstream 100 bases:

>100_bases
GCGTGAATAGCTGACTGACAAAAAAGCCTCGCGATGCATCGCGAGGCTTTCTCTTTTTATTGTGGCAATCGCAGCGGCAT
TAATGAGGGTTAATGCTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIAKKYNVGFLALLQANPGIDPY
VPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTTN
IRARYKAQGIDLPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNAGFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNI
INTPIKASVEPGGVRLVEVHQSL

Sequences:

>Translated_263_residues
MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIAKKYNVGFLALLQANPGIDPY
VPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTTN
IRARYKAQGIDLPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNAGFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNI
INTPIKASVEPGGVRLVEVHQSL
>Mature_263_residues
MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIAKKYNVGFLALLQANPGIDPY
VPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTTN
IRARYKAQGIDLPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNAGFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNI
INTPIKASVEPGGVRLVEVHQSL

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=263, Percent_Identity=87.0722433460076, Blast_Score=454, Evalue=1e-129,
Organism=Escherichia coli, GI1787968, Length=252, Percent_Identity=53.968253968254, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI1787040, Length=261, Percent_Identity=51.3409961685824, Blast_Score=254, Evalue=5e-69,
Organism=Escherichia coli, GI1788299, Length=252, Percent_Identity=51.984126984127, Blast_Score=246, Evalue=8e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 28305; Mature: 28305

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIA
CCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
KKYNVGFLALLQANPGIDPYVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGK
HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCC
NTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTTNIRARYKAQGIDLPAVVPAGP
CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCC
DNPMGHHAIRLAAYGGVYLLHGTNAGFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNI
CCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCEEEEECCCHHHHHHHCCCCCEEEE
INTPIKASVEPGGVRLVEVHQSL
EECCCEECCCCCCEEEEEEECCC
>Mature Secondary Structure
MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIA
CCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
KKYNVGFLALLQANPGIDPYVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGK
HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCC
NTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTTNIRARYKAQGIDLPAVVPAGP
CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCC
DNPMGHHAIRLAAYGGVYLLHGTNAGFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNI
CCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCEEEEECCCHHHHHHHCCCCCEEEE
INTPIKASVEPGGVRLVEVHQSL
EECCCEECCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]